Last updated on 2026-05-07 23:57:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 33.88 | 324.01 | 357.89 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 25.22 | 227.37 | 252.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 62.00 | 543.16 | 605.16 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 58.00 | 503.37 | 561.37 | OK | |
| r-devel-windows-x86_64 | 1.0.3 | 36.00 | 277.00 | 313.00 | OK | |
| r-patched-linux-x86_64 | 1.0.3 | 33.58 | 298.33 | 331.91 | ERROR | |
| r-release-linux-x86_64 | 1.0.3 | 31.96 | 298.40 | 330.36 | OK | |
| r-release-macos-arm64 | 1.0.3 | 8.00 | 65.00 | 73.00 | OK | |
| r-release-macos-x86_64 | 1.0.3 | 23.00 | 279.00 | 302.00 | OK | |
| r-release-windows-x86_64 | 1.0.3 | 33.00 | 266.00 | 299.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.3 | 8.00 | 63.00 | 71.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.3 | 25.00 | 466.00 | 491.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.3 | 47.00 | 369.00 | 416.00 | OK |
Version: 1.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(EcoCleanR)
>
> test_check("EcoCleanR")
Querying WoRMS for 'Mexacanthina lugubris'...
[NOT FOUND]'Mexacanthina lugubris' not found in WoRMS.
Saving _problems/test-data_cleaning-101.R
Saving _problems/test-data_cleaning-103.R
Saving _problems/test-data_cleaning-105.R
Saving _problems/test-data_cleaning-107.R
Suggested threshold at 96th percentile: 8801832
Imputation iteration 1
Imputation iteration 2
No more missing values to impute.
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 25 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• Skipping ec_extract_env_layers test - big shape files required to load for it
(1): 'test-data_cleaning.R:206:3'
• Skipping ec_flag_non_east_atlantic test - big shape files required to load
for it (1): 'test-data_cleaning.R:462:3'
• Skipping ec_flag_non_region test - big shape files required to load for it
(3): 'test-data_cleaning.R:191:3', 'test-data_cleaning.R:324:3',
'test-data_cleaning.R:366:3'
• Skipping ec_flag_non_west_atlantic test - big shape files required to load
for it (1): 'test-data_cleaning.R:484:3'
• Skipping ec_flag_non_west_pacific test - big shape files required to load for
it (1): 'test-data_cleaning.R:506:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-data_cleaning.R:101:3'): ec_worms_synonym works ──────────────
Expected `result` to be an S3 object.
Actual OO type: none.
── Failure ('test-data_cleaning.R:103:3'): ec_worms_synonym works ──────────────
Expected `all(c("Accepted_syn_worms", "ecodata_syn_with_count") %in% colnames(result))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-data_cleaning.R:105:3'): ec_worms_synonym works ──────────────
Expected `"Mexacanthina lugubris" %in% result$Accepted_syn_worms` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-data_cleaning.R:107:3'): ec_worms_synonym works ──────────────
Expected `any(grepl("Mexacanthina lugubris \\([0-9]+\\)", result$ecodata_syn_with_count))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 25 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64