Last updated on 2024-07-26 23:53:29 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.1 | 14.97 | 143.96 | 158.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.8.1 | 10.46 | 106.77 | 117.23 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.8.1 | 206.25 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8.1 | 210.48 | ERROR | |||
| r-devel-windows-x86_64 | 0.8.1 | 13.00 | 126.00 | 139.00 | OK | |
| r-patched-linux-x86_64 | 0.8.1 | ERROR | ||||
| r-release-linux-x86_64 | 0.8.1 | 11.21 | 140.30 | 151.51 | OK | |
| r-release-macos-arm64 | 0.8.1 | 57.00 | OK | |||
| r-release-macos-x86_64 | 0.8.1 | 88.00 | OK | |||
| r-release-windows-x86_64 | 0.8.1 | 13.00 | 124.00 | 137.00 | OK | |
| r-oldrel-macos-arm64 | 0.8.1 | 84.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.8.1 | 132.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.8.1 | 17.00 | 154.00 | 171.00 | ERROR |
Version: 0.8.1
Check: examples
Result: ERROR
Running examples in ‘IPDFileCheck-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_summary_gtsummary
> ### Title: Function to return the summary table using gtsummary package
> ### Aliases: get_summary_gtsummary
>
> ### ** Examples
>
> trial <- gtsummary::trial
> table1 <- get_summary_gtsummary(trial, c("trt", "age", "grade"),
+ byvar = "trt")
The following errors were returned during `::()`, `gtsummary()`, and
`modify_header()`:
✖ For variable `age` (`trt`) and "estimate" statistic: The package "cardx" (>=
0.2.0) is required.
✖ For variable `grade` (`trt`) and "estimate" statistic: The package "cardx"
(>= 0.2.0) is required.
Error in `dplyr::mutate()`:
ℹ In argument: `summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
Backtrace:
▆
1. ├─IPDFileCheck::get_summary_gtsummary(...)
2. │ └─... %>% gtsummary::bold_labels()
3. ├─gtsummary::bold_labels(.)
4. ├─gtsummary::modify_header(., label = "**Variable**")
5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**")
6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest)
7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**")
8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size)
9. │ ├─dplyr::select(...)
10. │ ├─dplyr::mutate(...)
11. │ ├─dplyr::mutate(...)
12. │ └─dplyr:::mutate.data.frame(...)
13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
14. │ ├─base::withCallingHandlers(...)
15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
16. │ └─mask$eval_all_mutate(quo)
17. │ └─dplyr (local) eval()
18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]])
19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...)
20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE)
21. ├─variable
22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable)
23. │ └─rlang:::data_pronoun_get(...)
24. └─rlang:::abort_data_pronoun(x, call = y)
25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.8.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(IPDFileCheck)
>
> test_check("IPDFileCheck")
The following errors were returned during `::()`, `gtsummary()`, and `modify_header()`:
x For variable `age` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `marker` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `response` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-IPDFilecheck.R:948:3'): testing getting summary from gtsummary ──
summary_tempdata$N (`actual`) not equal to 4 (`expected`).
`actual` is NULL
`expected` is a double vector (4)
── Error ('test-IPDFilecheck.R:951:3'): testing getting summary from gtsummary ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(dplyr::tibble(variable = names(fns)), summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]]), row_type = map_chr(.data$variable,
~location[[.x]]), label = map2(.data$variable, .data$row_type,
~dplyr::filter(x$table_body, .data$variable == .x, .data$row_type ==
.y)$label))`: i In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.8.1
Check: examples
Result: ERROR
Running examples in ‘IPDFileCheck-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_summary_gtsummary
> ### Title: Function to return the summary table using gtsummary package
> ### Aliases: get_summary_gtsummary
>
> ### ** Examples
>
> trial <- gtsummary::trial
> table1 <- get_summary_gtsummary(trial, c("trt", "age", "grade"),
+ byvar = "trt")
The following errors were returned during `::()`, `gtsummary()`, and
`modify_header()`:
✖ For variable `age` (`trt`) and "estimate" statistic: The package "cardx" (>=
0.2.0) is required.
✖ For variable `grade` (`trt`) and "estimate" statistic: The package "cardx"
(>= 0.2.0) is required.
Error in `dplyr::mutate()`:
ℹ In argument: `summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
Backtrace:
▆
1. ├─IPDFileCheck::get_summary_gtsummary(...)
2. │ └─... %>% gtsummary::bold_labels()
3. ├─gtsummary::bold_labels(.)
4. ├─gtsummary::modify_header(., label = "**Variable**")
5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**")
6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest)
7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**")
8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size)
9. │ ├─dplyr::select(...)
10. │ ├─dplyr::mutate(...)
11. │ ├─dplyr::mutate(...)
12. │ └─dplyr:::mutate.data.frame(...)
13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
14. │ ├─base::withCallingHandlers(...)
15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
16. │ └─mask$eval_all_mutate(quo)
17. │ └─dplyr (local) eval()
18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]])
19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...)
20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE)
21. ├─variable
22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable)
23. │ └─rlang:::data_pronoun_get(...)
24. └─rlang:::abort_data_pronoun(x, call = y)
25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-oldrel-windows-x86_64
Version: 0.8.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(IPDFileCheck)
>
> test_check("IPDFileCheck")
The following errors were returned during `::()`, `gtsummary()`, and `modify_header()`:
x For variable `age` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `marker` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `response` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-IPDFilecheck.R:948:3'): testing getting summary from gtsummary ──
summary_tempdata$N (`actual`) not equal to 4 (`expected`).
`actual` is NULL
`expected` is a double vector (4)
── Error ('test-IPDFilecheck.R:951:3'): testing getting summary from gtsummary ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(dplyr::tibble(variable = names(fns)), summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]]), row_type = map_chr(.data$variable,
~location[[.x]]), label = map2(.data$variable, .data$row_type,
~dplyr::filter(x$table_body, .data$variable == .x, .data$row_type ==
.y)$label))`: i In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.8.1
Check: examples
Result: ERROR
Running examples in ‘IPDFileCheck-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_summary_gtsummary
> ### Title: Function to return the summary table using gtsummary package
> ### Aliases: get_summary_gtsummary
>
> ### ** Examples
>
> trial <- gtsummary::trial
> table1 <- get_summary_gtsummary(trial, c("trt", "age", "grade"),
+ byvar = "trt")
Error in `dplyr::mutate()`:
ℹ In argument: `summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
Backtrace:
▆
1. ├─IPDFileCheck::get_summary_gtsummary(...)
2. │ └─... %>% gtsummary::bold_labels()
3. ├─gtsummary::bold_labels(.)
4. ├─gtsummary::modify_header(., label = "**Variable**")
5. ├─gtsummary::modify_header(., add_stat_2 ~ "**p value (Wilcox rank sum test for equal median)**")
6. ├─gtsummary::add_stat(., where(is.numeric) ~ wilcoxtest)
7. ├─gtsummary::modify_header(., add_stat_1 ~ "**Difference in mean**")
8. ├─gtsummary::add_stat(., fns = where(is.numeric) ~ get_effect_size)
9. │ ├─dplyr::select(...)
10. │ ├─dplyr::mutate(...)
11. │ ├─dplyr::mutate(...)
12. │ └─dplyr:::mutate.data.frame(...)
13. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
14. │ ├─base::withCallingHandlers(...)
15. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
16. │ └─mask$eval_all_mutate(quo)
17. │ └─dplyr (local) eval()
18. ├─gtsummary:::map_chr(.data$variable, ~x$inputs$type[[.x]])
19. │ └─gtsummary:::.rlang_purrr_map_mold(.x, .f, character(1), ...)
20. │ └─base::vapply(.x, .f, .mold, ..., USE.NAMES = FALSE)
21. ├─variable
22. ├─rlang:::`$.rlang_data_pronoun`(.data, variable)
23. │ └─rlang:::data_pronoun_get(...)
24. └─rlang:::abort_data_pronoun(x, call = y)
25. └─rlang::abort(msg, "rlang_error_data_pronoun_not_found", call = call)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.8.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(IPDFileCheck)
>
> test_check("IPDFileCheck")
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-IPDFilecheck.R:948:3'): testing getting summary from gtsummary ──
summary_tempdata$N (`actual`) not equal to 4 (`expected`).
`actual` is NULL
`expected` is a double vector (4)
── Error ('test-IPDFilecheck.R:951:3'): testing getting summary from gtsummary ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(dplyr::tibble(variable = names(fns)), summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]]), row_type = map_chr(.data$variable,
~location[[.x]]), label = map2(.data$variable, .data$row_type,
~dplyr::filter(x$table_body, .data$variable == .x, .data$row_type ==
.y)$label))`: i In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.8.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(IPDFileCheck)
>
> test_check("IPDFileCheck")
The following errors were returned during `::()`, `gtsummary()`, and `modify_header()`:
x For variable `age` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `marker` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `response` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-IPDFilecheck.R:948:3'): testing getting summary from gtsummary ──
summary_tempdata$N (`actual`) not equal to 4 (`expected`).
`actual` is NULL
`expected` is a double vector (4)
── Error ('test-IPDFilecheck.R:951:3'): testing getting summary from gtsummary ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(dplyr::tibble(variable = names(fns)), summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]]), row_type = map_chr(.data$variable,
~location[[.x]]), label = map2(.data$variable, .data$row_type,
~dplyr::filter(x$table_body, .data$variable == .x, .data$row_type ==
.y)$label))`: i In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.8.1
Check: tests
Result: ERROR
Running 'testthat.R' [14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(IPDFileCheck)
>
> test_check("IPDFileCheck")
The following errors were returned during `::()`, `gtsummary()`, and `modify_header()`:
x For variable `age` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `marker` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
x For variable `response` (`trt`) and "estimate" statistic: The package "cardx" (>= 0.2.0) is required.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-IPDFilecheck.R:948:3'): testing getting summary from gtsummary ──
summary_tempdata$N (`actual`) not equal to 4 (`expected`).
`actual` is NULL
`expected` is a double vector (4)
── Error ('test-IPDFilecheck.R:951:3'): testing getting summary from gtsummary ──
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `dplyr::mutate(dplyr::tibble(variable = names(fns)), summary_type = map_chr(.data$variable,
~x$inputs$type[[.x]]), row_type = map_chr(.data$variable,
~location[[.x]]), label = map2(.data$variable, .data$row_type,
~dplyr::filter(x$table_body, .data$variable == .x, .data$row_type ==
.y)$label))`: i In argument: `summary_type = map_chr(.data$variable, ~x$inputs$type[[.x]])`.
Caused by error in `.data$variable`:
! Column `variable` not found in `.data`.
[ FAIL 2 | WARN 8 | SKIP 0 | PASS 162 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64