Last updated on 2025-12-07 11:50:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 8.01 | 892.22 | 900.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 4.87 | 224.92 | 229.79 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 15.00 | 1365.31 | 1380.31 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 16.00 | 1237.69 | 1253.69 | OK | |
| r-devel-windows-x86_64 | 1.2.1 | 8.00 | 601.00 | 609.00 | OK | |
| r-patched-linux-x86_64 | 1.2.1 | 7.99 | 850.06 | 858.05 | OK | |
| r-release-linux-x86_64 | 1.2.1 | 5.36 | 857.12 | 862.48 | OK | |
| r-release-macos-arm64 | 1.2.1 | OK | ||||
| r-release-macos-x86_64 | 1.2.1 | 6.00 | 399.00 | 405.00 | OK | |
| r-release-windows-x86_64 | 1.2.1 | 8.00 | 604.00 | 612.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.2.1 | 9.00 | 383.00 | 392.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.1 | 13.00 | 875.00 | 888.00 | OK |
Version: 1.2.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'Hmisc', 'spelling', 'gt', 'flextable',
'visOmopResults'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘IncidencePrevalence-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: optionsTableIncidence
> ### Title: Additional arguments for the functions tableIncidence.
> ### Aliases: optionsTableIncidence
>
> ### ** Examples
>
> {
+ optionsTableIncidence()
+ }
Error in loadNamespace(x) : there is no package called ‘visOmopResults’
Calls: optionsTableIncidence ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [187s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(IncidencePrevalence)
>
> test_check("IncidencePrevalence")
Starting 2 test processes.
> test-estimateIncidence.R: i Creating denominator cohorts
> test-estimatePrevalence.R: i Creating denominator cohorts
> test-estimateIncidence.R: v Cohorts created in 0 min and 4 sec
> test-estimateIncidence.R: i Getting incidence for analysis 1 of 1
> test-estimatePrevalence.R: v Cohorts created in 0 min and 10 sec
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimatePrevalence.R: v Time taken: 0 mins and 1 secs
> test-estimateIncidence.R: v Overall time taken: 0 mins and 3 secs
> test-estimateIncidence.R: i Getting incidence for analysis 1 of 1
> test-estimateIncidence.R: v Overall time taken: 0 mins and 3 secs
> test-estimatePrevalence.R: i Creating denominator cohorts
> test-estimateIncidence.R: i Creating denominator cohorts
> test-estimatePrevalence.R: v Cohorts created in 0 min and 4 sec
> test-estimatePrevalence.R: i Creating denominator cohorts
> test-estimateIncidence.R: v Cohorts created in 0 min and 4 sec
> test-estimateIncidence.R: i Creating denominator cohorts
> test-estimatePrevalence.R: v Cohorts created in 0 min and 4 sec
> test-estimateIncidence.R: -- getting cohort dates for ========>---------------------- 4 of 15 cohorts
> test-estimatePrevalence.R: i Creating denominator cohorts
> test-estimateIncidence.R: -- getting cohort dates for ====================>---------- 10 of 15 cohorts
> test-estimateIncidence.R: -- getting cohort dates for ==============================> 15 of 15 cohorts
> test-estimatePrevalence.R: v Cohorts created in 0 min and 5 sec
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimatePrevalence.R: v Time taken: 0 mins and 2 secs
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimateIncidence.R: v Cohorts created in 0 min and 15 sec
> test-estimateIncidence.R: i Getting incidence for analysis 1 of 1
> test-estimateIncidence.R: v Overall time taken: 0 mins and 2 secs
> test-estimatePrevalence.R: v Time taken: 0 mins and 4 secs
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimateIncidence.R: i Getting incidence for analysis 1 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 2 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 3 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 4 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 5 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 6 of 15
> test-estimatePrevalence.R: v Time taken: 0 mins and 4 secs
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimateIncidence.R: i Getting incidence for analysis 7 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 8 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 9 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 10 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 11 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 12 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 13 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 14 of 15
> test-estimateIncidence.R: i Getting incidence for analysis 15 of 15
> test-estimatePrevalence.R: v Time taken: 0 mins and 8 secs
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimateIncidence.R: v Overall time taken: 0 mins and 14 secs
Saving _problems/test-estimateIncidence-1056.R
> test-estimatePrevalence.R: v Time taken: 0 mins and 8 secs
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-estimatePrevalence.R: i Getting prevalence for analysis 1 of 1
> test-generateDenominatorCohortSet.R: i Creating denominator cohorts
> test-generateDenominatorCohortSet.R: v Cohorts created in 0 min and 4 sec
> test-generateDenominatorCohortSet.R: i Creating denominator cohorts
> test-generateDenominatorCohortSet.R: v Cohorts created in 0 min and 7 sec
> test-generateDenominatorCohortSet.R: i Creating denominator cohorts
> test-generateDenominatorCohortSet.R: v Cohorts created in 0 min and 3 sec
> test-generateDenominatorCohortSet.R: i Creating denominator cohorts: target cohort id 1
> test-generateDenominatorCohortSet.R: v Cohorts created in 0 min and 5 sec
> test-generateDenominatorCohortSet.R: i Creating denominator cohorts: target cohort id 1
> test-generateDenominatorCohortSet.R: v Cohorts created in 0 min and 5 sec
[ FAIL 1 | WARN 0 | SKIP 101 | PASS 34 ]
══ Skipped tests (101) ═════════════════════════════════════════════════════════
• On CRAN (101): 'test-dateUtilities.R:2:3',
'test-benchmarkIncidencePrevalence.R:2:3',
'test-benchmarkIncidencePrevalence.R:45:3', 'test-estimateIncidence.R:57:3',
'test-estimateIncidence.R:120:3', 'test-estimateIncidence.R:230:3',
'test-estimateIncidence.R:300:3', 'test-estimateIncidence.R:399:3',
'test-estimateIncidence.R:503:3', 'test-estimateIncidence.R:598:3',
'test-estimateIncidence.R:762:3', 'test-estimateIncidence.R:869:3',
'test-estimateIncidence.R:1063:3', 'test-estimateIncidence.R:1127:3',
'test-estimateIncidence.R:1184:3', 'test-estimateIncidence.R:1269:3',
'test-estimateIncidence.R:1413:3', 'test-estimateIncidence.R:1529:3',
'test-estimateIncidence.R:1608:3', 'test-estimateIncidence.R:1716:3',
'test-estimateIncidence.R:1820:3', 'test-estimateIncidence.R:1979:3',
'test-estimateIncidence.R:2035:3', 'test-estimateIncidence.R:2233:3',
'test-estimateIncidence.R:2432:3', 'test-estimateIncidence.R:2517:3',
'test-estimateIncidence.R:2943:3', 'test-estimateIncidence.R:2991:3',
'test-estimateIncidence.R:3046:3', 'test-estimateIncidence.R:3104:3',
'test-estimateIncidence.R:3127:3', 'test-estimateIncidence.R:3142:3',
'test-estimateIncidence.R:3182:3', 'test-estimateIncidence.R:3344:3',
'test-estimateIncidence.R:3423:3', 'test-estimateIncidence.R:3467:3',
'test-estimateIncidence.R:3513:3', 'test-estimateIncidence.R:3561:3',
'test-estimatePrevalence.R:41:3', 'test-estimatePrevalence.R:93:3',
'test-estimatePrevalence.R:150:3', 'test-estimatePrevalence.R:269:3',
'test-estimatePrevalence.R:413:3', 'test-estimatePrevalence.R:495:3',
'test-estimatePrevalence.R:646:3', 'test-estimatePrevalence.R:697:3',
'test-estimatePrevalence.R:742:3', 'test-estimatePrevalence.R:797:3',
'test-estimatePrevalence.R:845:3', 'test-estimatePrevalence.R:869:3',
'test-estimatePrevalence.R:894:3', 'test-estimatePrevalence.R:1035:3',
'test-estimatePrevalence.R:1082:3', 'test-estimatePrevalence.R:1115:3',
'test-estimatePrevalence.R:1194:3', 'test-estimatePrevalence.R:1246:3',
'test-estimatePrevalence.R:1416:3', 'test-estimatePrevalence.R:1458:3',
'test-estimatePrevalence.R:1504:3', 'test-estimatePrevalence.R:1556:3',
'test-estimatePrevalence.R:1672:3', 'test-getStudyDays.R:2:3',
'test-getStudyDays.R:238:3', 'test-mockIncidencePrevalence.R:2:3',
'test-mockIncidencePrevalence.R:39:3', 'test-mockIncidencePrevalence.R:69:3',
'test-mockIncidencePrevalence.R:171:3', 'test-plotting.R:2:3',
'test-plotting.R:203:3', 'test-plotting.R:252:3', 'test-plotting.R:302:3',
'test-plotting.R:366:3', 'test-tables.R:2:3', 'test-tables.R:126:3',
'test-tidyResults.R:2:3', 'test-tidyResults.R:57:3',
'test-generateDenominatorCohortSet.R:138:3',
'test-generateDenominatorCohortSet.R:185:3',
'test-generateDenominatorCohortSet.R:289:3',
'test-generateDenominatorCohortSet.R:326:3',
'test-generateDenominatorCohortSet.R:591:3',
'test-generateDenominatorCohortSet.R:641:3',
'test-generateDenominatorCohortSet.R:720:3',
'test-generateDenominatorCohortSet.R:812:3',
'test-generateDenominatorCohortSet.R:855:3',
'test-generateDenominatorCohortSet.R:907:3',
'test-generateDenominatorCohortSet.R:991:3',
'test-generateDenominatorCohortSet.R:1118:3',
'test-generateDenominatorCohortSet.R:1199:3',
'test-generateDenominatorCohortSet.R:1263:3',
'test-generateDenominatorCohortSet.R:1316:3',
'test-generateDenominatorCohortSet.R:1374:3',
'test-generateDenominatorCohortSet.R:1449:3',
'test-generateDenominatorCohortSet.R:1572:3',
'test-generateDenominatorCohortSet.R:1673:3',
'test-generateDenominatorCohortSet.R:1726:3',
'test-generateDenominatorCohortSet.R:1789:3',
'test-generateDenominatorCohortSet.R:2018:3',
'test-generateDenominatorCohortSet.R:2109:3',
'test-generateDenominatorCohortSet.R:2309:3',
'test-generateDenominatorCohortSet.R:2413:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateIncidence.R:1049:3'): mock db: multiple denominator inputs ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `tableIncidence(inc_1, type = "tibble")`: The package "visOmopResults" (>= 1.0.2) is required.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-estimateIncidence.R:1049:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─IncidencePrevalence::tableIncidence(inc_1, type = "tibble")
5. └─rlang::check_installed("visOmopResults", version = "1.0.2")
[ FAIL 1 | WARN 0 | SKIP 101 | PASS 34 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc