Last updated on 2026-10-22 23:56:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 2.04 | 56.45 | 58.49 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 1.78 | 43.03 | 44.81 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 24.87 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 30.65 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.2 | 5.00 | 72.00 | 77.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 2.39 | 50.77 | 53.16 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 2.28 | 49.96 | 52.24 | OK | |
| r-release-macos-arm64 | 1.1.2 | 1.00 | 20.00 | 21.00 | OK | |
| r-release-macos-x86_64 | 1.1.2 | 2.00 | 64.00 | 66.00 | OK | |
| r-release-windows-x86_64 | 1.1.2 | 5.00 | 68.00 | 73.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.2 | 2.00 | 62.00 | 64.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.2 | 5.00 | 78.00 | 83.00 | OK |
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in ‘LTRCtrees-Ex.R’ failed
The error most likely occurred in:
> ### Name: LTRCART
> ### Title: Fit a relative risk survival tree for LTRC data
> ### Aliases: LTRCART
>
> ### ** Examples
>
> ## The Assay of serum free light chain data in survival package
> ## Adjust data & clean data
> library(survival)
> library(LTRCtrees)
> Data <- flchain
> Data <- Data[!is.na(Data$creatinine),]
> Data$End <- Data$age + Data$futime/365
> DATA <- Data[Data$End > Data$age,]
> names(DATA)[6] <- "FLC"
>
> ## Setup training set and test set
> Train = DATA[1:500,]
> Test = DATA[1000:1020,]
>
> ## Fit LTRCART survival tree
> ## make sure to attach survival package (by library(survival) ) before using Surv function
> LTRCART.obj <- LTRCART(Surv(age, End, death) ~ sex + FLC + creatinine, Train)
Error in a$specials[[i]] : subscript out of bounds
Calls: LTRCART ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘LTRCtrees.Rmd’ using rmarkdown
Quitting from LTRCtrees.Rmd:47-62 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─LTRCtrees::LTRCART(...)
2. └─survival::basehaz(temp)
3. ├─survival::survfit(fit, se.fit = FALSE)
4. └─survival:::survfit.coxph(fit, se.fit = FALSE)
5. └─survival:::model.matrix.coxph(object, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'LTRCtrees.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘LTRCtrees.Rmd’
SUMMARY: processing the following file failed:
‘LTRCtrees.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc