CRAN Package Check Results for Package SMDIC

Last updated on 2024-04-22 05:55:45 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.5 0.84 2.15 2.99 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.5 1.77 1.77 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.5 818.32 OK
r-devel-linux-x86_64-fedora-gcc 0.1.5 781.07 OK
r-prerel-macos-arm64 0.1.5 214.00 OK
r-prerel-macos-x86_64 0.1.5 376.00 OK
r-prerel-windows-x86_64 0.1.5 54.00 369.00 423.00 OK
r-patched-linux-x86_64 0.1.5 49.00 532.26 581.26 OK
r-release-linux-x86_64 0.1.5 56.66 537.20 593.86 OK
r-release-macos-arm64 0.1.5 9.00 ERROR
r-release-macos-x86_64 0.1.5 5.00 ERROR
r-release-windows-x86_64 0.1.5 63.00 515.00 578.00 OK
r-oldrel-macos-arm64 0.1.4 127.00 OK
r-oldrel-windows-x86_64 0.1.4 66.00 423.00 489.00 ERROR

Check Details

Version: 0.1.5
Check: package dependencies
Result: ERROR Package required but not available: ‘GSVA’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-macos-arm64, r-release-macos-x86_64

Version: 0.1.4
Check: examples
Result: ERROR Running examples in 'SMDIC-Ex.R' failed The error most likely occurred in: > ### Name: exp2cell > ### Title: exp2cell > ### Aliases: exp2cell > > ### ** Examples > > #get breast cancer gene expression profile. > exp.example<-GetExampleData("exp.example") > > #perform the exp2cell method. Method must be one of "xCell","ssGSEA" and "CIBERSORT". > cellmatrix<-exp2cell(exp=exp.example,method="ssGSEA") #cell abundance matrix Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Execution halted Flavor: r-oldrel-windows-x86_64

Version: 0.1.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'SMDIC.Rmd' using rmarkdown Quitting from lines 63-70 [unnamed-chunk-2] (SMDIC.Rmd) Error: processing vignette 'SMDIC.Rmd' failed with diagnostics: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. --- failed re-building 'SMDIC.Rmd' SUMMARY: processing the following file failed: 'SMDIC.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64