CRAN Package Check Results for Package SNPknock

Last updated on 2019-03-20 23:52:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.1 30.34 141.97 172.31 OK
r-devel-linux-x86_64-debian-gcc 0.7.1 24.23 100.62 124.85 OK
r-devel-linux-x86_64-fedora-clang 0.7.1 204.17 OK
r-devel-linux-x86_64-fedora-gcc 0.7.1 182.26 OK
r-devel-windows-ix86+x86_64 0.7.1 107.00 232.00 339.00 ERROR
r-patched-linux-x86_64 0.7.1 26.39 126.38 152.77 OK
r-patched-solaris-x86 0.7.1 291.50 OK
r-release-linux-x86_64 0.7.1 27.98 126.36 154.34 OK
r-release-windows-ix86+x86_64 0.7.1 90.00 209.00 299.00 OK
r-release-osx-x86_64 0.7.1 OK
r-oldrel-windows-ix86+x86_64 0.7.1 75.00 308.00 383.00 OK
r-oldrel-osx-x86_64 0.7.1 OK

Check Details

Version: 0.7.1
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'SNPknock-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: SNPknock.fp.loadFit
    > ### Title: Load the parameter estimates obtained by fastPHASE
    > ### Aliases: SNPknock.fp.loadFit
    >
    > ### ** Examples
    >
    > # Specify the location of the fastPHASE output files containing the parameter estimates.
    > # Example files can be found in the package installation directory.
    > r_file = system.file("extdata", "genotypes_rhat.txt", package = "SNPknock")
    > alpha_file = system.file("extdata", "genotypes_alphahat.txt", package = "SNPknock")
    > theta_file = system.file("extdata", "genotypes_thetahat.txt", package = "SNPknock")
    > char_file = system.file("extdata", "genotypes_origchars", package = "SNPknock")
    >
    > # Read the parameter files and build the HMM
    > hmm = SNPknock.fp.loadFit(r_file, alpha_file, theta_file, char_file)
    >
    >
    >
    >
    > cleanEx()
    Error: connections left open:
     lines (textConnection)
     lines (textConnection)
     lines (textConnection)
     lines (textConnection)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.7.1
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'SNPknock-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: SNPknock.fp.loadFit
    > ### Title: Load the parameter estimates obtained by fastPHASE
    > ### Aliases: SNPknock.fp.loadFit
    >
    > ### ** Examples
    >
    > # Specify the location of the fastPHASE output files containing the parameter estimates.
    > # Example files can be found in the package installation directory.
    > r_file = system.file("extdata", "genotypes_rhat.txt", package = "SNPknock")
    > alpha_file = system.file("extdata", "genotypes_alphahat.txt", package = "SNPknock")
    > theta_file = system.file("extdata", "genotypes_thetahat.txt", package = "SNPknock")
    > char_file = system.file("extdata", "genotypes_origchars", package = "SNPknock")
    >
    > # Read the parameter files and build the HMM
    > hmm = SNPknock.fp.loadFit(r_file, alpha_file, theta_file, char_file)
    >
    >
    >
    >
    > cleanEx()
    Error: connections left open:
     lines (textConnection)
     lines (textConnection)
     lines (textConnection)
     lines (textConnection)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64