CRAN Package Check Results for Package WGCNA

Last updated on 2019-05-25 17:48:30 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.68 56.38 299.44 355.82 OK
r-devel-linux-x86_64-debian-gcc 1.68 49.03 227.62 276.65 ERROR
r-devel-linux-x86_64-fedora-clang 1.68 456.10 OK
r-devel-linux-x86_64-fedora-gcc 1.68 454.77 OK
r-devel-windows-ix86+x86_64 1.68 93.00 387.00 480.00 OK
r-patched-linux-x86_64 1.68 OK
r-patched-solaris-x86 1.68 548.10 OK
r-release-linux-x86_64 1.68 53.78 295.08 348.86 OK
r-release-windows-ix86+x86_64 1.68 135.00 555.00 690.00 OK
r-release-osx-x86_64 1.68 ERROR
r-oldrel-windows-ix86+x86_64 1.67 112.00 356.00 468.00 OK
r-oldrel-osx-x86_64 1.68 NOTE

Check Details

Version: 1.68
Check: examples
Result: ERROR
    Running examples in ‘WGCNA-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: hierarchicalConsensusCalculation
    > ### Title: Hierarchical consensus calculation
    > ### Aliases: hierarchicalConsensusCalculation
    > ### Keywords: misc
    >
    > ### ** Examples
    >
    > # We generate 3 simple matrices
    > set.seed(5)
    > data = replicate(3, matrix(rnorm(10*100), 10, 100))
    > names(data) = c("Set1", "Set2", "Set3");
    > # Put together a consensus tree. In this example the final consensus uses
    > # as input set 1 and a consensus of sets 2 and 3.
    >
    > # First define the consensus of sets 2 and 3:
    > consTree.23 = newConsensusTree(
    + inputs = c("Set2", "Set3"),
    + consensusOptions = newConsensusOptions(calibration = "none",
    + consensusQuantile = 0.25),
    + analysisName = "Consensus of sets 1 and 2");
    >
    > # Now define the final consensus
    > consTree.final = newConsensusTree(
    + inputs = list("Set1", consTree.23),
    + consensusOptions = newConsensusOptions(calibration = "full quantile",
    + consensusQuantile = 0),
    + analysisName = "Final consensus");
    >
    > consensus = hierarchicalConsensusCalculation(
    + individualData = data,
    + consensusTree = consTree.final,
    + saveConsensusData = FALSE,
    + keepIntermediateResults = FALSE)
    ------------------------------------------------------------------
     Working on Final consensus
    ------------------------------------------------------------------
    ..Final consensus calculation..
    Error in normalize.quantiles(calibratedData) :
     ERROR; return code from pthread_create() is 22
    Calls: hierarchicalConsensusCalculation -> consensusCalculation -> normalize.quantiles
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.68
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'impute', 'preprocessCore', 'GO.db', 'AnnotationDbi'
    
    Packages suggested but not available for checking:
     'org.Hs.eg.db', 'org.Mm.eg.db', 'minet'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.68
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavor: r-oldrel-osx-x86_64