CRAN Package Check Results for Package admixr

Last updated on 2021-06-25 11:52:19 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.1 3.75 36.57 40.32 OK
r-devel-linux-x86_64-debian-gcc 0.9.1 2.64 28.87 31.51 OK
r-devel-linux-x86_64-fedora-clang 0.9.1 57.54 OK
r-devel-linux-x86_64-fedora-gcc 0.9.1 47.68 OK
r-devel-windows-x86_64 0.9.1 6.00 45.00 51.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.9.1 OK
r-patched-linux-x86_64 0.9.1 3.72 35.63 39.35 OK
r-patched-solaris-x86 0.9.1 74.10 WARN
r-release-linux-x86_64 0.9.1 2.82 35.58 38.40 OK
r-release-macos-arm64 0.9.1 OK
r-release-macos-x86_64 0.9.1 OK
r-release-windows-ix86+x86_64 0.9.1 5.00 45.00 50.00 OK
r-oldrel-macos-x86_64 0.9.1 OK
r-oldrel-windows-ix86+x86_64 0.9.1 8.00 48.00 56.00 OK

Check Details

Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘qpAdm.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    ADMIXTOOLS programs required by admixr are not in your $PATH variable.
    At the very least, the following programs should be available:
     qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
    Make sure to modify the $PATH variable in your .Renviron file so
    that it points to the directory containing the ADMIXTOOLS programs.
    
    Quitting from lines 131-134 (qpAdm.Rmd)
    Error: processing vignette 'qpAdm.Rmd' failed with diagnostics:
    'wget' call had nonzero exit status
    --- failed re-building ‘qpAdm.Rmd’
    
    --- re-building ‘tutorial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    ADMIXTOOLS programs required by admixr are not in your $PATH variable.
    At the very least, the following programs should be available:
     qp3Pop, qpDstat, qpF4ratio, qpAdm, qpWave
    Make sure to modify the $PATH variable in your .Renviron file so
    that it points to the directory containing the ADMIXTOOLS programs.
    
    ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
    ✔ ggplot2 3.3.3 ✔ purrr 0.3.4
    ✔ tibble 3.1.2 ✔ dplyr 1.0.6
    ✔ tidyr 1.1.3 ✔ stringr 1.4.0
    ✔ readr 1.4.0 ✔ forcats 0.5.1
    ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
    ✖ dplyr::filter() masks stats::filter()
    ✖ dplyr::lag() masks stats::lag()
    Quitting from lines 132-133 (tutorial.Rmd)
    Error: processing vignette 'tutorial.Rmd' failed with diagnostics:
    'wget' call had nonzero exit status
    --- failed re-building ‘tutorial.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘qpAdm.Rmd’ ‘tutorial.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86