CRAN Package Check Results for Package afex

Last updated on 2021-06-25 11:52:19 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.28-1 18.07 374.99 393.06 OK
r-devel-linux-x86_64-debian-gcc 0.28-1 12.87 268.69 281.56 OK
r-devel-linux-x86_64-fedora-clang 0.28-1 486.23 NOTE
r-devel-linux-x86_64-fedora-gcc 0.28-1 446.35 OK
r-devel-windows-x86_64 0.28-1 26.00 458.00 484.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.28-1 OK
r-patched-linux-x86_64 0.28-1 23.80 346.83 370.63 OK
r-patched-solaris-x86 0.28-1 617.60 WARN
r-release-linux-x86_64 0.28-1 20.16 344.87 365.03 OK
r-release-macos-arm64 0.28-1 OK
r-release-macos-x86_64 0.28-1 OK
r-release-windows-ix86+x86_64 0.28-1 27.00 325.00 352.00 OK
r-oldrel-macos-x86_64 0.28-1 OK
r-oldrel-windows-ix86+x86_64 0.28-1 27.00 401.00 428.00 OK

Check Details

Version: 0.28-1
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘ez’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.28-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘glmmTMB’
Flavor: r-patched-solaris-x86

Version: 0.28-1
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     doc 3.6Mb
Flavor: r-patched-solaris-x86

Version: 0.28-1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    --- finished re-building ‘afex_analysing_accuracy_data.Rmd’
    
    --- re-building ‘afex_anova_example.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    --- finished re-building ‘afex_anova_example.Rmd’
    
    --- re-building ‘afex_mixed_example.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:MASS':
    
     select
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'tidyr'
    
    The following objects are masked from 'package:Matrix':
    
     expand, pack, unpack
    
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    No summary function supplied, defaulting to `mean_se()`
    --- finished re-building ‘afex_mixed_example.Rmd’
    
    --- re-building ‘afex_plot_introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    NOTE: Results may be misleading due to involvement in interactions
    NOTE: Results may be misleading due to involvement in interactions
    --- finished re-building ‘afex_plot_introduction.Rmd’
    
    --- re-building ‘afex_plot_supported_models.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    Loading required package: lme4
    Loading required package: Matrix
    ************
    Welcome to afex. For support visit: http://afex.singmann.science/
    - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
    - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
    - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
    - NEWS: library('emmeans') now needs to be called explicitly!
    - Get and set global package options with: afex_options()
    - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
    - For example analyses see: browseVignettes("afex")
    ************
    
    Attaching package: 'afex'
    
    The following object is masked from 'package:lme4':
    
     lmer
    
    Quitting from lines 159-162 (afex_plot_supported_models.Rmd)
    Error: processing vignette 'afex_plot_supported_models.Rmd' failed with diagnostics:
    there is no package called 'glmmTMB'
    --- failed re-building ‘afex_plot_supported_models.Rmd’
    
    --- re-building ‘introduction-mixed-models.pdf.asis’ using asis
    --- finished re-building ‘introduction-mixed-models.pdf.asis’
    
    SUMMARY: processing the following file failed:
     ‘afex_plot_supported_models.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86