Last updated on 2026-03-22 17:51:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 22.29 | 203.60 | 225.89 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 17.01 | 147.92 | 164.93 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 40.00 | 349.07 | 389.07 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 39.00 | 359.52 | 398.52 | OK | |
| r-devel-macos-arm64 | 0.1.1 | 6.00 | 87.00 | 93.00 | OK | |
| r-devel-windows-x86_64 | 0.1.1 | 23.00 | 214.00 | 237.00 | OK | |
| r-patched-linux-x86_64 | 0.1.1 | 21.89 | 197.21 | 219.10 | ERROR | |
| r-release-linux-x86_64 | 0.1.1 | 22.91 | 202.26 | 225.17 | OK | |
| r-release-macos-arm64 | 0.1.1 | 6.00 | 109.00 | 115.00 | OK | |
| r-release-macos-x86_64 | 0.1.1 | 16.00 | 274.00 | 290.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 25.00 | 214.00 | 239.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 6.00 | 89.00 | 95.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 17.00 | 251.00 | 268.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 34.00 | 270.00 | 304.00 | OK |
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘annotaR-workflow.Rmd’ using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.processResults()`:
! Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. ├─annotaR::add_drug_links(.)
3. │ └─"gene" %in% names(annotaR_object)
4. └─annotaR::add_disease_links(.)
5. └─biomaRt::getBM(...)
6. └─biomaRt:::.processResults(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
--- failed re-building ‘annotaR-workflow.Rmd’
SUMMARY: processing the following file failed:
‘annotaR-workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64