Last updated on 2023-03-22 05:52:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.1 | 9.60 | 93.41 | 103.01 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.11.1 | 7.75 | 73.09 | 80.84 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.11.1 | 151.71 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.11.1 | 148.47 | ERROR | |||
| r-devel-windows-x86_64 | 0.11.1 | 17.00 | 126.00 | 143.00 | NOTE | |
| r-patched-linux-x86_64 | 0.11.1 | 8.78 | 89.58 | 98.36 | NOTE | |
| r-release-linux-x86_64 | 0.11.1 | 8.11 | 89.01 | 97.12 | NOTE | |
| r-release-macos-arm64 | 0.11.1 | 38.00 | NOTE | |||
| r-release-macos-x86_64 | 0.11.1 | 55.00 | NOTE | |||
| r-release-windows-x86_64 | 0.11.1 | 20.00 | 133.00 | 153.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.11.1 | 214.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.11.1 | 54.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.11.1 | 25.00 | 142.00 | 167.00 | NOTE |
Version: 0.11.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'kBET', 'lisi', 'dlfUtils'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.11.1
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.11.1
Check: examples
Result: ERROR
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
>
> ### ** Examples
>
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p <- 100
> n <- 200
>
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
>
> ## Scale A to give input, X
> X <- scale(A)
>
> resUnadj <- Rtsne::Rtsne(X) ## Standard t-SNE
> resAdj <- bctsne(X = X, Z = Z, k = 10) ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) :
DLL requires the use of native symbols
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.11.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘splatter’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.11.1
Check: examples
Result: ERROR
Running examples in ‘bcTSNE-Ex.R’ failed
The error most likely occurred in:
> ### Name: bctsne
> ### Title: Calculate BC t-SNE by orthogonal gradient descent
> ### Aliases: bctsne
>
> ### ** Examples
>
> ## Create small simulated dataset, A, with embeded batch effects
> set.seed(2731)
> kRid <- 20
> p <- 100
> n <- 200
>
> W <- matrix(rnorm(p*kRid), kRid)
> S <- matrix(rnorm(n*kRid), n)
> z <- sample(1:3, rep = TRUE, size = n)
> Z <- model.matrix( ~ -1 + as.factor(z))
> l <- matrix(rnorm(kRid*NCOL(Z)), kRid)
> A <- (S - Z %*% t(l) ) %*% W
>
> ## Scale A to give input, X
> X <- scale(A)
>
> resUnadj <- Rtsne::Rtsne(X) ## Standard t-SNE
> resAdj <- bctsne(X = X, Z = Z, k = 10) ## Batch-corrected t-SNE
Warning in type.convert.default(maxIter) :
'as.is' should be specified by the caller; using TRUE
Error in bctsne(X = X, Z = Z, k = 10) :
DLL requires the use of native symbols
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc