CRAN Package Check Results for Maintainer ‘Adam Black <black at ohdsi.org>’

Last updated on 2024-07-27 11:49:17 CEST.

Package	ERROR	OK
CDMConnector	2	11

Package CDMConnector

Current CRAN status: ERROR: 2, OK: 11

Version: 1.5.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘a05_cdm_reference_backends.Rmd’ ... > cdm$condition_occurrence <- cdm$condition_occurrence %>% + filter(condition_concept_id == "4035415") %>% select(person_id, + condition_sta .... [TRUNCATED] When sourcing ‘a05_cdm_reference_backends.R’: Error: condition_occurrence_id, condition_concept_id and condition_type_concept_id are not present in table condition_occurrence Execution halted Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. ‘a01_getting-started.Rmd’ using ‘UTF-8’... [5s/6s] OK ‘a02_cohorts.Rmd’ using ‘UTF-8’... [13s/12s] OK ‘a03_dbplyr.Rmd’ using ‘UTF-8’... [3s/3s] OK ‘a04_DBI_connection_examples.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘a05_cdm_reference_backends.Rmd’ using ‘UTF-8’... failed ‘a06_using_cdm_attributes.Rmd’ using ‘UTF-8’... [3s/3s] OK Flavor: r-oldrel-macos-arm64

Version: 1.5.0
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘a05_cdm_reference_backends.Rmd’ ... > cdm$condition_occurrence <- cdm$condition_occurrence %>% + filter(condition_concept_id == "4035415") %>% select(person_id, + condition_sta .... [TRUNCATED] When sourcing ‘a05_cdm_reference_backends.R’: Error: condition_occurrence_id, condition_concept_id and condition_type_concept_id are not present in table condition_occurrence Execution halted Warning: Connection is garbage-collected, use dbDisconnect() to avoid this. ‘a01_getting-started.Rmd’ using ‘UTF-8’... [8s/12s] OK ‘a02_cohorts.Rmd’ using ‘UTF-8’... [22s/31s] OK ‘a03_dbplyr.Rmd’ using ‘UTF-8’... [4s/7s] OK ‘a04_DBI_connection_examples.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘a05_cdm_reference_backends.Rmd’ using ‘UTF-8’... failed ‘a06_using_cdm_attributes.Rmd’ using ‘UTF-8’... [5s/6s] OK Flavor: r-oldrel-macos-x86_64