Last updated on 2026-10-22 23:56:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 3.62 | 127.28 | 130.90 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 2.58 | 90.15 | 92.73 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 86.74 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 89.34 | ERROR | |||
| r-devel-windows-x86_64 | 0.4.0 | 7.00 | 178.00 | 185.00 | NOTE | |
| r-patched-linux-x86_64 | 0.4.0 | 4.65 | 116.87 | 121.52 | OK | |
| r-release-linux-x86_64 | 0.4.0 | 3.52 | 117.71 | 121.23 | OK | |
| r-release-macos-arm64 | 0.4.0 | 1.00 | 36.00 | 37.00 | OK | |
| r-release-macos-x86_64 | 0.4.0 | 3.00 | 138.00 | 141.00 | OK | |
| r-release-windows-x86_64 | 0.4.0 | 8.00 | 150.00 | 158.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.0 | 1.00 | 46.00 | 47.00 | OK | |
| r-oldrel-macos-x86_64 | 0.4.0 | 3.00 | 141.00 | 144.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.0 | 9.00 | 191.00 | 200.00 | OK |
Version: 0.4.0
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
butcher/tests/testthat/test-multnet.R (.Label: 1)
butcher/tests/testthat/test-randomForest.R (.Label: 1)
butcher/tests/testthat/test-train.R (.Label: 1)
'.Label' should be changed to 'levels'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(butcher)
>
> test_check("butcher")
Saving _problems/test-coxph-67.R
Saving _problems/test-ipred-74.R
Saving _problems/test-ipred-161.R
1 package (dimRed) is needed for this step but is not installed.
To install run: `install.packages("dimRed")`
[ FAIL 3 | WARN 0 | SKIP 44 | PASS 202 ]
══ Skipped tests (44) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test-c5.R:2:3', 'test-earth.R:2:3', 'test-earth.R:31:3',
'test-elnet.R:2:3', 'test-flexsurvreg.R:2:3', 'test-flexsurvreg.R:18:3',
'test-flexsurvreg.R:56:3', 'test-gausspr.R:2:3', 'test-glmnet.R:2:3',
'test-kknn.R:2:3', 'test-klaR.R:2:3', 'test-klaR.R:16:3', 'test-ksvm.R:2:3',
'test-mda.R:2:3', 'test-mda.R:24:3', 'test-mda.R:98:3',
'test-mixOmics.R:2:3', 'test-mixOmics.R:21:3', 'test-mixOmics.R:40:3',
'test-multnet.R:2:3', 'test-new.R:1:1', 'test-nnet.R:2:3',
'test-randomForest.R:2:3', 'test-rpart.R:2:3', 'test-rpart.R:22:3',
'test-rsample.R:1:1', 'test-rsample.R:21:1', 'test-rsample.R:34:1',
'test-rsample.R:55:1', 'test-rsample.R:72:1', 'test-sclass.R:2:3',
'test-survreg.R:2:3', 'test-survreg.penal.R:2:3', 'test-tabnet_fit.R:2:3',
'test-tabnet_fit.R:20:3', 'test-tabnet_fit.R:37:3', 'test-train.R:2:3',
'test-train.R:44:3', 'test-train.recipe.R:9:3', 'test-ui.R:1:1',
'test-weigh.R:1:1', 'test-xgb.R:6:3', 'test-xgb.R:51:3'
• {mixOmics} is not installed (1): 'test-recipe.R:454:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-coxph.R:64:3'): coxph + predict() works ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-coxph.R:64:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─stats::predict(x, newdata = head(example_data))
5. └─survival:::predict.coxph(x, newdata = head(example_data))
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-ipred.R:59:3'): ipred + rpart + axing works (survbagg) ─────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─ipred::bagging(...) at test-ipred.R:59:3
2. └─ipred:::bagging.data.frame(...)
3. ├─base::do.call("ipredbagg", c(DATA, list(...)))
4. ├─ipred::ipredbagg(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
5. └─ipred:::ipredbagg.Surv(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
6. └─ipred::sbrier(RET$y, predict(RET))
7. └─prodlim::prodlim(Surv(time, cens) ~ 1, reverse = TRUE)
8. └─prodlim::EventHistory.frame(...)
9. └─prodlim::model.design(...)
10. └─stats::delete.response(terms)
11. └─stats (local) off(a$specials[[i]])
── Error ('test-ipred.R:146:3'): ipred + rpart + predict() works (survbagg) ────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─ipred::bagging(...) at test-ipred.R:146:3
2. └─ipred:::bagging.data.frame(...)
3. ├─base::do.call("ipredbagg", c(DATA, list(...)))
4. ├─ipred::ipredbagg(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
5. └─ipred:::ipredbagg.Surv(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
6. └─ipred::sbrier(RET$y, predict(RET))
7. └─prodlim::prodlim(Surv(time, cens) ~ 1, reverse = TRUE)
8. └─prodlim::EventHistory.frame(...)
9. └─prodlim::model.design(...)
10. └─stats::delete.response(terms)
11. └─stats (local) off(a$specials[[i]])
[ FAIL 3 | WARN 0 | SKIP 44 | PASS 202 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(butcher)
>
> test_check("butcher")
Saving _problems/test-coxph-67.R
Saving _problems/test-ipred-74.R
Saving _problems/test-ipred-161.R
[ FAIL 3 | WARN 0 | SKIP 43 | PASS 203 ]
══ Skipped tests (43) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test-c5.R:2:3', 'test-earth.R:2:3', 'test-earth.R:31:3',
'test-elnet.R:2:3', 'test-flexsurvreg.R:2:3', 'test-flexsurvreg.R:18:3',
'test-flexsurvreg.R:56:3', 'test-gausspr.R:2:3', 'test-glmnet.R:2:3',
'test-kknn.R:2:3', 'test-klaR.R:2:3', 'test-klaR.R:16:3', 'test-ksvm.R:2:3',
'test-mda.R:2:3', 'test-mda.R:24:3', 'test-mda.R:98:3',
'test-mixOmics.R:2:3', 'test-mixOmics.R:21:3', 'test-mixOmics.R:40:3',
'test-multnet.R:2:3', 'test-new.R:1:1', 'test-nnet.R:2:3',
'test-randomForest.R:2:3', 'test-rpart.R:2:3', 'test-rpart.R:22:3',
'test-rsample.R:1:1', 'test-rsample.R:21:1', 'test-rsample.R:34:1',
'test-rsample.R:55:1', 'test-rsample.R:72:1', 'test-sclass.R:2:3',
'test-survreg.R:2:3', 'test-survreg.penal.R:2:3', 'test-tabnet_fit.R:2:3',
'test-tabnet_fit.R:20:3', 'test-tabnet_fit.R:37:3', 'test-train.R:2:3',
'test-train.R:44:3', 'test-train.recipe.R:9:3', 'test-ui.R:1:1',
'test-weigh.R:1:1', 'test-xgb.R:6:3', 'test-xgb.R:51:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-coxph.R:64:3'): coxph + predict() works ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-coxph.R:64:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─stats::predict(x, newdata = head(example_data))
5. └─survival:::predict.coxph(x, newdata = head(example_data))
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-ipred.R:59:3'): ipred + rpart + axing works (survbagg) ─────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─ipred::bagging(...) at test-ipred.R:59:3
2. └─ipred:::bagging.data.frame(...)
3. ├─base::do.call("ipredbagg", c(DATA, list(...)))
4. ├─ipred::ipredbagg(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
5. └─ipred:::ipredbagg.Surv(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
6. └─ipred::sbrier(RET$y, predict(RET))
7. └─prodlim::prodlim(Surv(time, cens) ~ 1, reverse = TRUE)
8. └─prodlim::EventHistory.frame(...)
9. └─prodlim::model.design(...)
10. └─stats::delete.response(terms)
11. └─stats (local) off(a$specials[[i]])
── Error ('test-ipred.R:146:3'): ipred + rpart + predict() works (survbagg) ────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─ipred::bagging(...) at test-ipred.R:146:3
2. └─ipred:::bagging.data.frame(...)
3. ├─base::do.call("ipredbagg", c(DATA, list(...)))
4. ├─ipred::ipredbagg(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
5. └─ipred:::ipredbagg.Surv(y = `<Surv>`, X = `<df[,11]>`, coob = TRUE)
6. └─ipred::sbrier(RET$y, predict(RET))
7. └─prodlim::prodlim(Surv(time, cens) ~ 1, reverse = TRUE)
8. └─prodlim::EventHistory.frame(...)
9. └─prodlim::model.design(...)
10. └─stats::delete.response(terms)
11. └─stats (local) off(a$specials[[i]])
[ FAIL 3 | WARN 0 | SKIP 43 | PASS 203 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc