Last updated on 2026-10-24 00:52:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.3 | 6.10 | 688.23 | 694.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.3 | 3.78 | 66.31 | 70.09 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.3 | 540.66 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.3 | 4.00 | 517.08 | 521.08 | OK | |
| r-devel-windows-x86_64 | 0.2.3 | 11.00 | 724.00 | 735.00 | OK | |
| r-patched-linux-x86_64 | 0.2.3 | 7.12 | 664.42 | 671.54 | OK | |
| r-release-linux-x86_64 | 0.2.3 | 5.68 | 671.99 | 677.67 | OK | |
| r-release-macos-arm64 | 0.2.3 | 1.00 | 160.00 | 161.00 | OK | |
| r-release-macos-x86_64 | 0.2.3 | 4.00 | 559.00 | 563.00 | OK | |
| r-release-windows-x86_64 | 0.2.3 | 8.00 | 684.00 | 692.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.3 | 2.00 | 148.00 | 150.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.3 | 4.00 | 505.00 | 509.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.3 | 11.00 | 927.00 | 938.00 | OK |
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in ‘contsurvplot-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: curve_cont
> ### Title: Estimate Counterfactual Survival or Failure Probabilities for
> ### Levels of a Continuous Variable
> ### Aliases: curve_cont
>
> ### ** Examples
>
> library(contsurvplot)
> library(riskRegression)
riskRegression version 2026.03.11
> library(survival)
>
> # using data from the survival package
> data(nafld, package="survival")
>
> # take a random sample to keep example fast
> set.seed(42)
> nafld1 <- nafld1[sample(nrow(nafld1), 150), ]
>
> # fit cox-model with age
> model <- coxph(Surv(futime, status) ~ age, data=nafld1, x=TRUE)
>
> # estimate survival probability at some points in time, for
> # a range of age values
> plotdata <- curve_cont(data=nafld1,
+ variable="age",
+ model=model,
+ horizon=c(50, 60, 70, 80),
+ times=c(1000, 2000, 3000, 4000))
Error in a$specials[[i]] : subscript out of bounds
Calls: curve_cont ... predictCox -> coxVariableName -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(contsurvplot)
Please cite as:
Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
> library(survival)
> library(testthat)
>
> test_check("contsurvplot")
Saving _problems/test_curve_cont-13.R
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starting worker pid=3856762 on localhost:11643 at 16:32:39.392
starting worker pid=3856763 on localhost:11643 at 16:32:39.438
Loading required package: contsurvplot
Please cite as:
Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
loaded contsurvplot and set parent environment
Loading required package: contsurvplot
Please cite as:
Denz R, Timmesfeld N (2023). "Visualizing the (Causal) Effect of a Continuous Variable on a Time-To-Event Outcome." Epidemiology, 34 (5). doi: 10.1097/EDE.0000000000001630.
loaded contsurvplot and set parent environment
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[ FAIL 118 | WARN 0 | SKIP 0 | PASS 102 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_curve_cont.r:12:3'): defaults, 1 time, 1 cont ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:12:3
2. └─contsurvplot:::one_iteration(...)
3. ├─riskRegression::predictRisk(...)
4. └─riskRegression:::predictRisk.coxph(...)
5. └─riskRegression::predictCox(...)
6. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
7. └─stats::delete.response(...)
8. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:19:3'): defaults, 1 time, 1 cont, group ───────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:19:3
2. └─contsurvplot:::one_iteration(...)
3. ├─riskRegression::predictRisk(...)
4. └─riskRegression:::predictRisk.coxph(...)
5. └─riskRegression::predictCox(...)
6. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
7. └─stats::delete.response(...)
8. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:27:3'): defaults, multiple times, multiple cont ───
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:27:3
2. └─contsurvplot:::one_iteration(...)
3. ├─riskRegression::predictRisk(...)
4. └─riskRegression:::predictRisk.coxph(...)
5. └─riskRegression::predictCox(...)
6. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
7. └─stats::delete.response(...)
8. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:35:3'): defaults, 1 time, 1 cont, cif ─────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:35:3
2. └─contsurvplot:::one_iteration(...)
3. ├─riskRegression::predictRisk(...)
4. └─riskRegression:::predictRisk.coxph(...)
5. └─riskRegression::predictCox(...)
6. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
7. └─stats::delete.response(...)
8. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:42:3'): defaults, multicore processing ────────────
Error in `{ out_i <- vector(mode = "list", length = length(horizon)) for (j in seq_len(length(group_levs))) { out_i[[j]] <- one_iteration(data = data, variable = variable, cont_value = horizon[i], group = group, group_levs = group_levs, group_lev = group_levs[j], cause = cause, cif = cif, times = times, model = model, ...) } dplyr::bind_rows(out_i) }`: task 1 failed - "subscript out of bounds"
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:42:3
2. └─... %dopar% ...
3. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
── Error ('test_curve_cont.r:51:3'): defaults, 1 time, 1 cont, boot ────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:51:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:60:3'): defaults, 1 time, 1 cont, boot, multicore ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:60:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:69:3'): defaults, 1 time, 1 cont, group, boot ─────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:69:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:82:3'): return_boot ───────────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:82:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:90:3'): contrasts working ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:90:3
2. └─contsurvplot:::one_iteration(...)
3. ├─riskRegression::predictRisk(...)
4. └─riskRegression:::predictRisk.coxph(...)
5. └─riskRegression::predictCox(...)
6. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
7. └─stats::delete.response(...)
8. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:129:3'): conf_int, diff, km ───────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:129:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:144:3'): conf_int, ratio, km ──────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:144:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:159:3'): conf_int, diff, value ────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:159:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:174:3'): conf_int, ratio, value ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:174:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_curve_cont.r:188:3'): contrast, conf_int ───────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::curve_cont(...) at test_curve_cont.r:188:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:10:3'): plot, defaults ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:10:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:17:3'): plot, cif ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:17:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:25:3'): plot, change horizon ─────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:25:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:32:3'): plot, at t ───────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:32:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:39:3'): plot, custom non-interactive ─────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:39:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:47:3'): plot, interactive ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:47:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:54:3'): plot, interactive + args ─────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:54:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_3Dsurface.r:62:3'): plot, interactive, changing axis ranges ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_3Dsurface(...) at test_plot_surv_3Dsurface.r:62:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:12:3'): plot, defaults ────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:12:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:18:3'): plot, kaplan_meier ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:18:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:26:3'): plot, cif ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:26:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:32:3'): plot, change horizon ──────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:32:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:38:3'): plot, at t ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:38:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:45:3'): plot, custom color ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:45:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:51:3'): plot, no slider ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:51:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:58:3'): plot, no slider, kaplan_meier ─────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:58:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:68:3'): plot, no slider, with ci ──────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:68:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:75:3'): plot, with group ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:75:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:81:3'): plot, lots of stuff ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_animated(...) at test_plot_surv_animated.r:81:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:90:3'): error when trying conf_int with slider ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test_plot_surv_animated.r:90:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─contsurvplot::plot_surv_animated(...)
8. └─contsurvplot::curve_cont(...)
9. └─contsurvplot::curve_cont(...)
10. └─contsurvplot:::one_iteration(...)
11. ├─riskRegression::predictRisk(...)
12. └─riskRegression:::predictRisk.coxph(...)
13. └─riskRegression::predictCox(...)
14. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
15. └─stats::delete.response(...)
16. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_animated.r:98:3'): error when trying km_ci with slider ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test_plot_surv_animated.r:98:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─contsurvplot::plot_surv_animated(...)
8. └─contsurvplot::curve_cont(...)
9. └─contsurvplot:::one_iteration(...)
10. ├─riskRegression::predictRisk(...)
11. └─riskRegression:::predictRisk.coxph(...)
12. └─riskRegression::predictCox(...)
13. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
14. └─stats::delete.response(...)
15. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:17:3'): plot, defaults ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:17:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:24:3'): plot, with group ──────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:24:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:31:3'): plot, with nonmonotonic ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:31:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:38:3'): plot, cif ─────────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:38:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:46:3'): plot, change horizon ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:46:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:53:3'): plot, at t ────────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:53:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:60:3'): plot, custom colors ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:60:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:68:3'): plot, discrete + bins ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:68:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:75:3'): plot, discrete round ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:75:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:83:3'): plot, sep_lines ───────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:83:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:92:3'): plot, with kaplan_meier ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:92:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:101:3'): plot, lots of stuff ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_area(...) at test_plot_surv_area.r:101:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_area.r:120:3'): using discrete with monotonic=FALSE ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_plot_surv_area.r:120:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─contsurvplot::plot_surv_area(...)
8. └─contsurvplot::curve_cont(...)
9. └─contsurvplot:::one_iteration(...)
10. ├─riskRegression::predictRisk(...)
11. └─riskRegression:::predictRisk.coxph(...)
12. └─riskRegression::predictCox(...)
13. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
14. └─stats::delete.response(...)
15. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:14:3'): plot, defaults ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:14:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:21:3'): plot, with ci, one t ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:21:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:29:3'): plot, with ci, multiple t ─────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:29:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:37:3'): plot, cif ─────────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:37:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:45:3'): plot, change horizon ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:45:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:53:3'): plot, custom colors ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:53:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:61:3'): plot, with group ──────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:61:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_at_t.r:68:3'): plot, lots of stuff ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_at_t(...) at test_plot_surv_at_t.r:68:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:24:3'): plot, defaults ─────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:24:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:34:3'): plot, with group ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:34:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:44:3'): plot, cif ──────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:44:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:54:3'): plot, change horizon ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:54:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:64:3'): plot, at t ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:64:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:74:3'): plot, custom colors ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:74:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:86:3'): plot, panel_border / axis_dist ─────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:86:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_contour.r:97:3'): plot, lots of stuff ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_contour(...) at test_plot_surv_contour.r:97:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:20:3'): plot, defaults ─────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:20:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:27:3'): plot, with group ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:27:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:34:3'): plot, cif ──────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:34:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:41:3'): plot, change horizon ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:41:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:48:3'): plot, at t ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:48:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:55:3'): plot, custom colors ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:55:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:63:3'): plot, panel_border / axis_dist ─────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:63:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:71:3'): plot, contour_lines ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:71:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_heatmap.r:83:3'): plot, lots of stuff ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_heatmap(...) at test_plot_surv_heatmap.r:83:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:12:3'): plot, defaults ───────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:12:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:19:3'): plot, kaplan_meier ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:19:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:30:3'): plot, with ci ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:30:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:38:3'): plot, with group ─────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:38:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:45:3'): plot, cif ────────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:45:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:52:3'): plot, change horizon ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:52:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:59:3'): plot, at t ───────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:59:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:66:3'): plot, custom colors ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:66:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:75:3'): plot, cont color ─────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:75:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_lines.r:83:3'): plot, lots of stuff ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_lines(...) at test_plot_surv_lines.r:83:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:12:3'): plot, defaults ──────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:12:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:19:3'): plot, cif ───────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:19:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:26:3'): plot, change horizon ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:26:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:33:3'): plot, change fixed_t ────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:33:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:40:3'): plot, custom colors ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:40:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:48:3'): plot, panel_border / axis_dist ──────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:48:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:56:3'): plot, change n_col and n_row ────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:56:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:63:3'): plot, change border stuff ───────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:63:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:71:3'): plot, change numbers stuff ──────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:71:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_matrix.r:81:3'): plot, using group ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_matrix(...) at test_plot_surv_matrix.r:81:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_quantiles.r:12:3'): plot, defaults ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_quantiles(...) at test_plot_surv_quantiles.r:12:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_quantiles.r:19:3'): plot, with group ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_quantiles(...) at test_plot_surv_quantiles.r:19:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_quantiles.r:26:3'): plot, change horizon ─────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_quantiles(...) at test_plot_surv_quantiles.r:26:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_quantiles.r:33:3'): plot, custom colors ──────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_quantiles(...) at test_plot_surv_quantiles.r:33:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_quantiles.r:41:3'): plot, single color ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_quantiles(...) at test_plot_surv_quantiles.r:41:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_quantiles.r:49:3'): plot, lots of stuff ──────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_quantiles(...) at test_plot_surv_quantiles.r:49:3
2. └─contsurvplot::curve_cont(...)
3. └─contsurvplot:::one_iteration(...)
4. ├─riskRegression::predictRisk(...)
5. └─riskRegression:::predictRisk.coxph(...)
6. └─riskRegression::predictCox(...)
7. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
8. └─stats::delete.response(...)
9. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:14:3'): plot, defaults ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:14:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:21:3'): plot, with CI ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:21:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:29:3'): plot, with group ──────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:29:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:36:3'): plot, with CI + group ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:36:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:44:3'): plot, multiple tau ────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:44:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:51:3'): plot, multiple tau + CI ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:51:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:59:3'): plot, change horizon ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:59:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:67:3'): plot, custom_colors ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:67:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmst.r:75:3'): plot, lots of stuff ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmst(...) at test_plot_surv_rmst.r:75:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:14:3'): plot, defaults ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:14:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:21:3'): plot, with CI ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:21:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:29:3'): plot, with group ──────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:29:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:36:3'): plot, with group + CI ─────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:36:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:44:3'): plot, multiple tau ────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:44:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:51:3'): plot, multiple tau + CI ───────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:51:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:59:3'): plot, change horizon ──────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:59:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:67:3'): plot, custom_colors ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:67:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
── Error ('test_plot_surv_rmtl.r:75:3'): plot, lots of stuff ───────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─contsurvplot::plot_surv_rmtl(...) at test_plot_surv_rmtl.r:75:3
2. └─contsurvplot:::curve_cont_auc(...)
3. └─contsurvplot::curve_cont(...)
4. └─contsurvplot:::one_iteration(...)
5. ├─riskRegression::predictRisk(...)
6. └─riskRegression:::predictRisk.coxph(...)
7. └─riskRegression::predictCox(...)
8. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
9. └─stats::delete.response(...)
10. └─stats (local) off(a$specials[[i]])
[ FAIL 118 | WARN 0 | SKIP 0 | PASS 102 ]
Deleting unused snapshots: 'plot_surv_3Dsurface/plot-at-t.svg',
'plot_surv_3Dsurface/plot-change-horizon.svg',
'plot_surv_3Dsurface/plot-cif.svg',
'plot_surv_3Dsurface/plot-custom-non-interactive.svg',
'plot_surv_3Dsurface/plot-defaults.svg', 'plot_surv_area/plot-at-t.svg',
'plot_surv_area/plot-change-horizon.svg', 'plot_surv_area/plot-cif.svg',
'plot_surv_area/plot-custom-colors.svg', 'plot_surv_area/plot-defaults.svg',
'plot_surv_area/plot-discrete-bins.svg',
'plot_surv_area/plot-discrete-round.svg',
'plot_surv_area/plot-lots-of-stuff.svg', 'plot_surv_area/plot-sep-lines.svg',
'plot_surv_area/plot-with-group.svg',
'plot_surv_area/plot-with-kaplan-meier.svg',
'plot_surv_area/plot-with-nonmonotonic.svg',
'plot_surv_at_t/plot-change-horizon.svg', …,
'plot_surv_rmtl/plot-with-group-ci.svg', and
'plot_surv_rmtl/plot-with-group.svg'
Error:
! Test failures.
Execution halted
Error in unserialize(node$con) :
error reading from connection '->localhost:11643'
Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Error in unserialize(node$con) :
error reading from connection '->localhost:11643'
Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:93-96 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─contsurvplot::curve_cont(...)
2. └─contsurvplot:::one_iteration(...)
3. ├─riskRegression::predictRisk(...)
4. └─riskRegression:::predictRisk.coxph(...)
5. └─riskRegression::predictCox(...)
6. └─riskRegression::coxVariableName(object, model.frame = object.modelFrame)
7. └─stats::delete.response(...)
8. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc