CRAN Package Check Results for Package ctsem

Last updated on 2025-12-23 11:52:34 CET.

Flavor	Version	T_install	T_check	T_total	Status	Flags
r-devel-linux-x86_64-debian-clang	3.10.4	1232.03	376.63	1608.66	ERROR
r-devel-linux-x86_64-debian-gcc	3.10.4	1078.21	315.21	1393.42	ERROR
r-devel-linux-x86_64-fedora-clang	3.10.4	1440.00	624.73	2064.73	ERROR
r-devel-linux-x86_64-fedora-gcc	3.10.4	2280.00	593.18	2873.18	ERROR
r-devel-windows-x86_64	3.10.4	1064.00	499.00	1563.00	OK	--no-vignettes
r-patched-linux-x86_64	3.10.4	1231.09	440.88	1671.97	OK
r-release-linux-x86_64	3.10.4	1247.27	436.90	1684.17	OK
r-release-macos-arm64	3.10.4				OK
r-release-windows-x86_64	3.10.4	1061.00	408.00	1469.00	OK	--no-vignettes
r-oldrel-macos-arm64	3.10.4				NOTE
r-oldrel-windows-x86_64	3.10.4	1102.00	495.00	1597.00	NOTE	--no-vignettes

Additional issues

donttest

Check Details

Version: 3.10.4
Check: examples
Result: ERROR Running examples in ‘ctsem-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ctACF > ### Title: Continuous Time Autocorrelation Function (ctACF) > ### Aliases: ctACF > > ### ** Examples > > data.table::setDTthreads(1) #ignore this line > # Example usage: > head(ctstantestdat) id time Y1 Y2 TD1 TI1 TI2 TI3 4 1 0.000000 8.628419 13.55213 0 -0.05380504 -1.366299 -0.2074973 5 1 0.123705 NA 11.34075 NA -0.05380504 -1.366299 -0.2074973 6 1 0.594186 7.500058 12.33738 0 -0.05380504 -1.366299 -0.2074973 7 1 0.888842 6.834832 12.63265 1 -0.05380504 -1.366299 -0.2074973 8 1 1.186905 7.010044 11.90834 0 -0.05380504 -1.366299 -0.2074973 9 1 1.624510 6.791367 10.21116 0 -0.05380504 -1.366299 -0.2074973 > ctACF(ctstantestdat,varnames=c('Y1'),idcol='id',timecol='time',nboot=5) Loading required namespace: collapse Error in `[.data.table`(dat, , `:=`(.timediff, c(NA, diff(get(timecol)))), : attempt access index 8/8 in VECTOR_ELT Calls: ctACF -> quantile -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 3.10.4
Check: tests
Result: ERROR Running ‘testthat.R’ [100s/127s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ctsem) Loading required package: Rcpp ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions > pdf(NULL) > test_check("ctsem") Saving _problems/test-intervalise-12.R Saving _problems/test-reshaping-30.R [,1] [,2] [1,] "0" "0" [2,] "0" "diff" [,1] [1,] "0" [,1] [1,] "0" [2,] "cint" ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=1704197 on localhost:34338 at 23:39:30.866 starting worker pid=1704198 on localhost:34338 at 23:39:31.611 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=1713545 on localhost:39191 at 23:40:03.554 starting worker pid=1713544 on localhost:39191 at 23:40:03.956 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% The following object is masked from ‘package:base’: %notin% SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 1). SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.010495 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 104.95 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 1: Chain 1: Gradient evaluation took 0.019997 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 199.97 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 2: Iteration: 1 / 300 [ 0%] (Warmup) Chain 1: Iteration: 1 / 300 [ 0%] (Warmup) Chain 1: Iteration: 20 / 300 [ 6%] (Warmup) Chain 2: Iteration: 20 / 300 [ 6%] (Warmup) Chain 2: Iteration: 40 / 300 [ 13%] (Warmup) Chain 1: Iteration: 40 / 300 [ 13%] (Warmup) Chain 2: Iteration: 60 / 300 [ 20%] (Warmup) Chain 1: Iteration: 60 / 300 [ 20%] (Warmup) Chain 2: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 100 / 300 [ 33%] (Warmup) Chain 2: Iteration: 100 / 300 [ 33%] (Warmup) Chain 1: Iteration: 120 / 300 [ 40%] (Warmup) Chain 2: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 140 / 300 [ 46%] (Warmup) Chain 1: Iteration: 151 / 300 [ 50%] (Sampling) Chain 2: Iteration: 140 / 300 [ 46%] (Warmup) Chain 2: Iteration: 151 / 300 [ 50%] (Sampling) Chain 1: Iteration: 170 / 300 [ 56%] (Sampling) Chain 2: Iteration: 170 / 300 [ 56%] (Sampling) Chain 1: Iteration: 190 / 300 [ 63%] (Sampling) Chain 2: Iteration: 190 / 300 [ 63%] (Sampling) Chain 1: Iteration: 210 / 300 [ 70%] (Sampling) Chain 2: Iteration: 210 / 300 [ 70%] (Sampling) Chain 1: Iteration: 230 / 300 [ 76%] (Sampling) Chain 2: Iteration: 230 / 300 [ 76%] (Sampling) Chain 1: Iteration: 250 / 300 [ 83%] (Sampling) Chain 2: Iteration: 250 / 300 [ 83%] (Sampling) Chain 1: Iteration: 270 / 300 [ 90%] (Sampling) Chain 2: Iteration: 270 / 300 [ 90%] (Sampling) Chain 1: Iteration: 290 / 300 [ 96%] (Sampling) Chain 2: Iteration: 290 / 300 [ 96%] (Sampling) Chain 1: Iteration: 300 / 300 [100%] (Sampling) Chain 2: Iteration: 300 / 300 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 25.372 seconds (Warm-up) Chain 2: 13.889 seconds (Sampling) Chain 2: 39.261 seconds (Total) Chain 2: Chain 1: Chain 1: Elapsed Time: 23.852 seconds (Warm-up) Chain 1: 15.426 seconds (Sampling) Chain 1: 39.278 seconds (Total) Chain 1: [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • empty test (16): , , , , , , , , , , , , , , , ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-intervalise.R:10:3'): intervals ──────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) ── Error ('test-reshaping.R:29:3'): reshaping1 ───────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.10.4
Check: tests
Result: ERROR Running ‘testthat.R’ [74s/92s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ctsem) Loading required package: Rcpp ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions > pdf(NULL) > test_check("ctsem") Saving _problems/test-intervalise-12.R Saving _problems/test-reshaping-30.R [,1] [,2] [1,] "0" "0" [2,] "0" "diff" [,1] [1,] "0" [,1] [1,] "0" [2,] "cint" ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=2371737 on localhost:37957 at 15:36:44.443 starting worker pid=2371736 on localhost:37957 at 15:36:44.916 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% The following object is masked from ‘package:base’: %notin% ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=2424066 on localhost:26002 at 15:37:05.053 ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=2424067 on localhost:26002 at 15:37:06.443 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.011558 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 115.58 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 2). Chain 1: Iteration: 1 / 300 [ 0%] (Warmup) Chain 2: Chain 2: Gradient evaluation took 0.027619 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 276.19 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 300 [ 0%] (Warmup) Chain 2: Iteration: 20 / 300 [ 6%] (Warmup) Chain 1: Iteration: 20 / 300 [ 6%] (Warmup) Chain 2: Iteration: 40 / 300 [ 13%] (Warmup) Chain 1: Iteration: 40 / 300 [ 13%] (Warmup) Chain 2: Iteration: 60 / 300 [ 20%] (Warmup) Chain 1: Iteration: 60 / 300 [ 20%] (Warmup) Chain 2: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 80 / 300 [ 26%] (Warmup) Chain 2: Iteration: 100 / 300 [ 33%] (Warmup) Chain 1: Iteration: 100 / 300 [ 33%] (Warmup) Chain 1: Iteration: 120 / 300 [ 40%] (Warmup) Chain 2: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 140 / 300 [ 46%] (Warmup) Chain 1: Iteration: 151 / 300 [ 50%] (Sampling) Chain 2: Iteration: 140 / 300 [ 46%] (Warmup) Chain 2: Iteration: 151 / 300 [ 50%] (Sampling) Chain 1: Iteration: 170 / 300 [ 56%] (Sampling) Chain 1: Iteration: 190 / 300 [ 63%] (Sampling) Chain 2: Iteration: 170 / 300 [ 56%] (Sampling) Chain 1: Iteration: 210 / 300 [ 70%] (Sampling) Chain 2: Iteration: 190 / 300 [ 63%] (Sampling) Chain 1: Iteration: 230 / 300 [ 76%] (Sampling) Chain 2: Iteration: 210 / 300 [ 70%] (Sampling) Chain 1: Iteration: 250 / 300 [ 83%] (Sampling) Chain 2: Iteration: 230 / 300 [ 76%] (Sampling) Chain 1: Iteration: 270 / 300 [ 90%] (Sampling) Chain 1: Iteration: 290 / 300 [ 96%] (Sampling) Chain 2: Iteration: 250 / 300 [ 83%] (Sampling) Chain 1: Iteration: 300 / 300 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 18.485 seconds (Warm-up) Chain 1: 8.718 seconds (Sampling) Chain 1: 27.203 seconds (Total) Chain 1: Chain 2: Iteration: 270 / 300 [ 90%] (Sampling) Chain 2: Iteration: 290 / 300 [ 96%] (Sampling) Chain 2: Iteration: 300 / 300 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 18.865 seconds (Warm-up) Chain 2: 13.489 seconds (Sampling) Chain 2: 32.354 seconds (Total) Chain 2: [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • empty test (16): , , , , , , , , , , , , , , , ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-intervalise.R:10:3'): intervals ──────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) ── Error ('test-reshaping.R:29:3'): reshaping1 ───────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.10.4
Check: examples
Result: ERROR Running examples in ‘ctsem-Ex.R’ failed The error most likely occurred in: > ### Name: ctACF > ### Title: Continuous Time Autocorrelation Function (ctACF) > ### Aliases: ctACF > > ### ** Examples > > data.table::setDTthreads(1) #ignore this line > # Example usage: > head(ctstantestdat) id time Y1 Y2 TD1 TI1 TI2 TI3 4 1 0.000000 8.628419 13.55213 0 -0.05380504 -1.366299 -0.2074973 5 1 0.123705 NA 11.34075 NA -0.05380504 -1.366299 -0.2074973 6 1 0.594186 7.500058 12.33738 0 -0.05380504 -1.366299 -0.2074973 7 1 0.888842 6.834832 12.63265 1 -0.05380504 -1.366299 -0.2074973 8 1 1.186905 7.010044 11.90834 0 -0.05380504 -1.366299 -0.2074973 9 1 1.624510 6.791367 10.21116 0 -0.05380504 -1.366299 -0.2074973 > ctACF(ctstantestdat,varnames=c('Y1'),idcol='id',timecol='time',nboot=5) Loading required namespace: collapse Error in `[.data.table`(dat, , `:=`(.timediff, c(NA, diff(get(timecol)))), : attempt access index 8/8 in VECTOR_ELT Calls: ctACF -> quantile -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.10.4
Check: tests
Result: ERROR Running ‘testthat.R’ [181s/327s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ctsem) Loading required package: Rcpp ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions > pdf(NULL) > test_check("ctsem") Saving _problems/test-intervalise-12.R Saving _problems/test-reshaping-30.R [,1] [,2] [1,] "0" "0" [2,] "0" "diff" [,1] [1,] "0" [,1] [1,] "0" [2,] "cint" ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=1558680 on localhost:28220 at 17:45:03.882 ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=1558681 on localhost:28220 at 17:45:07.151 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=1564202 on localhost:38575 at 17:46:17.958 starting worker pid=1564201 on localhost:38575 at 17:46:18.762 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% The following object is masked from ‘package:base’: %notin% SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.039327 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 393.27 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.061976 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 619.76 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 300 [ 0%] (Warmup) Chain 1: Iteration: 1 / 300 [ 0%] (Warmup) Chain 2: Iteration: 20 / 300 [ 6%] (Warmup) Chain 1: Iteration: 20 / 300 [ 6%] (Warmup) Chain 2: Iteration: 40 / 300 [ 13%] (Warmup) Chain 1: Iteration: 40 / 300 [ 13%] (Warmup) Chain 2: Iteration: 60 / 300 [ 20%] (Warmup) Chain 2: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 60 / 300 [ 20%] (Warmup) Chain 2: Iteration: 100 / 300 [ 33%] (Warmup) Chain 1: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 100 / 300 [ 33%] (Warmup) Chain 2: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 120 / 300 [ 40%] (Warmup) Chain 2: Iteration: 140 / 300 [ 46%] (Warmup) Chain 1: Iteration: 140 / 300 [ 46%] (Warmup) Chain 2: Iteration: 151 / 300 [ 50%] (Sampling) Chain 1: Iteration: 151 / 300 [ 50%] (Sampling) Chain 2: Iteration: 170 / 300 [ 56%] (Sampling) Chain 1: Iteration: 170 / 300 [ 56%] (Sampling) Chain 2: Iteration: 190 / 300 [ 63%] (Sampling) Chain 1: Iteration: 190 / 300 [ 63%] (Sampling) Chain 2: Iteration: 210 / 300 [ 70%] (Sampling) Chain 1: Iteration: 210 / 300 [ 70%] (Sampling) Chain 2: Iteration: 230 / 300 [ 76%] (Sampling) Chain 1: Iteration: 230 / 300 [ 76%] (Sampling) Chain 2: Iteration: 250 / 300 [ 83%] (Sampling) Chain 1: Iteration: 250 / 300 [ 83%] (Sampling) Chain 2: Iteration: 270 / 300 [ 90%] (Sampling) Chain 1: Iteration: 270 / 300 [ 90%] (Sampling) Chain 2: Iteration: 290 / 300 [ 96%] (Sampling) Chain 1: Iteration: 290 / 300 [ 96%] (Sampling) Chain 2: Iteration: 300 / 300 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 84.339 seconds (Warm-up) Chain 2: 36.809 seconds (Sampling) Chain 2: 121.148 seconds (Total) Chain 2: Chain 1: Iteration: 300 / 300 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 85.138 seconds (Warm-up) Chain 1: 38.077 seconds (Sampling) Chain 1: 123.215 seconds (Total) Chain 1: [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • empty test (16): , , , , , , , , , , , , , , , ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-intervalise.R:10:3'): intervals ──────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) ── Error ('test-reshaping.R:29:3'): reshaping1 ───────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.10.4
Check: tests
Result: ERROR Running ‘testthat.R’ [137s/164s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(ctsem) Loading required package: Rcpp ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions > pdf(NULL) > test_check("ctsem") Saving _problems/test-intervalise-12.R Saving _problems/test-reshaping-30.R [,1] [,2] [1,] "0" "0" [2,] "0" "diff" [,1] [1,] "0" [,1] [1,] "0" [2,] "cint" ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=3476290 on localhost:37464 at 06:54:02.652 starting worker pid=3476291 on localhost:37464 at 06:54:05.122 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=3482066 on localhost:28695 at 06:54:42.127 starting worker pid=3482067 on localhost:28695 at 06:54:44.506 Loading required package: data.table Loading required package: data.table Attaching package: ‘data.table’ Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% The following object is masked from ‘package:base’: %notin% SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 2). SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 1). Chain 2: Chain 2: Gradient evaluation took 0.011708 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 117.08 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 1: Chain 1: Gradient evaluation took 0.025986 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 259.86 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 2: Iteration: 1 / 300 [ 0%] (Warmup) Chain 1: Iteration: 1 / 300 [ 0%] (Warmup) Chain 2: Iteration: 20 / 300 [ 6%] (Warmup) Chain 1: Iteration: 20 / 300 [ 6%] (Warmup) Chain 2: Iteration: 40 / 300 [ 13%] (Warmup) Chain 1: Iteration: 40 / 300 [ 13%] (Warmup) Chain 2: Iteration: 60 / 300 [ 20%] (Warmup) Chain 1: Iteration: 60 / 300 [ 20%] (Warmup) Chain 2: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 80 / 300 [ 26%] (Warmup) Chain 2: Iteration: 100 / 300 [ 33%] (Warmup) Chain 1: Iteration: 100 / 300 [ 33%] (Warmup) Chain 2: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 140 / 300 [ 46%] (Warmup) Chain 2: Iteration: 140 / 300 [ 46%] (Warmup) Chain 1: Iteration: 151 / 300 [ 50%] (Sampling) Chain 2: Iteration: 151 / 300 [ 50%] (Sampling) Chain 1: Iteration: 170 / 300 [ 56%] (Sampling) Chain 2: Iteration: 170 / 300 [ 56%] (Sampling) Chain 1: Iteration: 190 / 300 [ 63%] (Sampling) Chain 2: Iteration: 190 / 300 [ 63%] (Sampling) Chain 1: Iteration: 210 / 300 [ 70%] (Sampling) Chain 2: Iteration: 210 / 300 [ 70%] (Sampling) Chain 1: Iteration: 230 / 300 [ 76%] (Sampling) Chain 2: Iteration: 230 / 300 [ 76%] (Sampling) Chain 1: Iteration: 250 / 300 [ 83%] (Sampling) Chain 2: Iteration: 250 / 300 [ 83%] (Sampling) Chain 2: Iteration: 270 / 300 [ 90%] (Sampling) Chain 1: Iteration: 270 / 300 [ 90%] (Sampling) Chain 2: Iteration: 290 / 300 [ 96%] (Sampling) Chain 2: Iteration: 300 / 300 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 36.586 seconds (Warm-up) Chain 2: 15.904 seconds (Sampling) Chain 2: 52.49 seconds (Total) Chain 2: Chain 1: Iteration: 290 / 300 [ 96%] (Sampling) Chain 1: Iteration: 300 / 300 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 35.628 seconds (Warm-up) Chain 1: 20.041 seconds (Sampling) Chain 1: 55.669 seconds (Total) Chain 1: [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • empty test (16): , , , , , , , , , , , , , , , ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-intervalise.R:10:3'): intervals ──────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) ── Error ('test-reshaping.R:29:3'): reshaping1 ───────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.10.4
Check: installed package size
Result: NOTE installed size is 201.7Mb sub-directories of 1Mb or more: R 2.0Mb data 1.7Mb libs 196.6Mb Flavor: r-oldrel-macos-arm64

Version: 3.10.4
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavor: r-oldrel-macos-arm64

Version: 3.10.4
Flags: --no-vignettes
Check: installed package size
Result: NOTE installed size is 11.6Mb sub-directories of 1Mb or more: R 1.2Mb data 1.7Mb libs 7.3Mb Flavor: r-oldrel-windows-x86_64