CRAN Package Check Results for Package eggCounts

Last updated on 2019-07-16 05:48:11 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2 673.85 108.22 782.07 NOTE
r-devel-linux-x86_64-debian-gcc 2.2 650.92 111.05 761.97 NOTE
r-devel-linux-x86_64-fedora-clang 2.2 1155.00 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2 1544.35 NOTE
r-devel-windows-ix86+x86_64 2.2 1701.00 207.00 1908.00 NOTE
r-patched-linux-x86_64 2.2 732.36 141.95 874.31 NOTE
r-patched-solaris-x86 2.2 1075.30 NOTE
r-release-linux-x86_64 2.2 728.32 140.34 868.66 NOTE
r-release-windows-ix86+x86_64 2.2 1230.00 205.00 1435.00 NOTE
r-release-osx-x86_64 2.2 ERROR
r-oldrel-windows-ix86+x86_64 2.2 1651.00 262.00 1913.00 NOTE
r-oldrel-osx-x86_64 2.2 ERROR

Check Details

Version: 2.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'eggCountsExtra'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.2
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.2
Check: installed package size
Result: NOTE
     installed size is 95.7Mb
     sub-directories of 1Mb or more:
     libs 95.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘methods’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 2.2
Check: examples
Result: ERROR
    Running examples in ‘eggCounts-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: stan2mcmc
    > ### Title: Convert a Stanfit object to a MCMC object
    > ### Aliases: stan2mcmc
    > ### Keywords: manip
    >
    > ### ** Examples
    >
    > data(epgs)
    >
    > ## apply zero-infation model for the paired design
    > model <- fecr_stan(epgs$before, epgs$after, rawCounts = FALSE,
    + indEfficacy = FALSE, preCF = 10,
    + paired = TRUE, zeroInflation = TRUE)
    
    SAMPLING FOR MODEL 'zipaired' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 4.7e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.47 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " c++ exception (unknown reason)"
    Stan model 'zipaired' does not contain samples.
    Error in sum(sapply(sp, FUN = function(x) { :
     invalid 'type' (list) of argument
    Calls: fecr_stan -> checkDivergence
    Execution halted
Flavor: r-release-osx-x86_64

Version: 2.2
Check: examples
Result: ERROR
    Running examples in ‘eggCounts-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: fec_stan
    > ### Title: Modelling of faecal egg count data (one-sample case)
    > ### Aliases: fec_stan
    > ### Keywords: models
    >
    > ### ** Examples
    >
    > ## load the sample data
    > data(epgs)
    >
    > ## apply zero-infation model
    > model <- fec_stan(epgs$before, rawCounts = FALSE, CF = 50)
    
    SAMPLING FOR MODEL 'zinb' NOW (CHAIN 1).
    Chain 1:
    Chain 1: Gradient evaluation took 5.7e-05 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.57 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1:
    Chain 1:
    Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
    Chain 1: Iteration: 500 / 2000 [ 25%] (Warmup)
    Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup)
    Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling)
    Chain 1: Iteration: 1500 / 2000 [ 75%] (Sampling)
    Chain 1: Iteration: 2000 / 2000 [100%] (Sampling)
    Chain 1:
    Chain 1: Elapsed Time: 0.615846 seconds (Warm-up)
    Chain 1: 0.405553 seconds (Sampling)
    Chain 1: 1.0214 seconds (Total)
    Chain 1:
    
    SAMPLING FOR MODEL 'zinb' NOW (CHAIN 2).
    Chain 2:
    Chain 2: Gradient evaluation took 1.4e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2:
    Chain 2:
    Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup)
    [1] "Error in sampler$call_sampler(args_list[[i]]) : "
    [2] " c++ exception (unknown reason)"
    Stan model 'zinb' does not contain samples.
    Error in sum(sapply(sp, FUN = function(x) { :
     invalid 'type' (list) of argument
    Calls: fec_stan -> checkDivergence
    Execution halted
Flavor: r-oldrel-osx-x86_64