Last updated on 2025-12-09 23:51:52 CET.
| Package | ERROR | OK |
|---|---|---|
| sarp.snowprofile.alignment | 3 | 10 |
| sarp.snowprofile.pyface | 13 |
Current CRAN status: ERROR: 3, OK: 10
Version: 2.0.2
Check: examples
Result: ERROR
Running examples in ‘sarp.snowprofile.alignment-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dtwSP
> ### Title: Calculate DTW alignment of two snow profiles
> ### Aliases: dtwSP
>
> ### ** Examples
>
>
> ## Align a modeled and a manual snow profile, primarily based on default settings:
> dtwAlignment <- dtwSP(SPpairs$A_modeled, SPpairs$A_manual, open.end = FALSE)
Error in r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0] :
non-numeric argument to binary operator
Calls: dtwSP ... format_snowprofileLayers -> snowprofileLayers -> diff -> diff.default
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sarp.snowprofile.alignment)
Loading required package: sarp.snowprofile
>
> test_check("sarp.snowprofile.alignment")
Saving _problems/test-distanceSP-8.R
Saving _problems/test-dtwSP-8.R
Saving _problems/test-dtwSP-19.R
Saving _problems/test-dtwSP-31.R
Saving _problems/test-dtwSP-42.R
Saving _problems/test-dtwSP-54.R
Saving _problems/test-dtwSP-77.R
Saving _problems/test-dtwSP-112.R
Saving _problems/test-dtwSP-124.R
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ──────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ──────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ───────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ──────────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ──────────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘averaging.Rmd’ using rmarkdown
Quitting from averaging.Rmd:45-52 [avgSPcalc]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `averageSP()`:
! Can't find an average profile!
---
Backtrace:
▆
1. └─sarp.snowprofile.alignment::averageSP(SPgroup2, n = 1, progressbar = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'averaging.Rmd' failed with diagnostics:
Can't find an average profile!
--- failed re-building ‘averaging.Rmd’
--- re-building ‘clustering.Rmd’ using rmarkdown
Quitting from clustering.Rmd:91-94 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `hclust()`:
! NA/NaN/Inf in foreign function call (arg 10)
---
Backtrace:
▆
1. └─sarp.snowprofile.alignment::clusterSP(...)
2. ├─base::do.call("hclust", c(list(d = distmat), config$args_cluster))
3. └─stats::hclust(d = `<dist[,5]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clustering.Rmd' failed with diagnostics:
NA/NaN/Inf in foreign function call (arg 10)
--- failed re-building ‘clustering.Rmd’
--- re-building ‘technical-details.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘technical-details.Rmd’
--- re-building ‘workflow.Rmd’ using rmarkdown
Quitting from workflow.Rmd:38-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`:
! non-numeric argument to binary operator
---
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...)
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'workflow.Rmd' failed with diagnostics:
non-numeric argument to binary operator
--- failed re-building ‘workflow.Rmd’
SUMMARY: processing the following files failed:
‘averaging.Rmd’ ‘clustering.Rmd’ ‘workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sarp.snowprofile.alignment)
Loading required package: sarp.snowprofile
>
> test_check("sarp.snowprofile.alignment")
Saving _problems/test-distanceSP-8.R
Saving _problems/test-dtwSP-8.R
Saving _problems/test-dtwSP-19.R
Saving _problems/test-dtwSP-31.R
Saving _problems/test-dtwSP-42.R
Saving _problems/test-dtwSP-54.R
Saving _problems/test-dtwSP-77.R
Saving _problems/test-dtwSP-112.R
Saving _problems/test-dtwSP-124.R
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ──────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ──────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ───────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ──────────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ──────────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.2
Check: examples
Result: ERROR
Running examples in 'sarp.snowprofile.alignment-Ex.R' failed
The error most likely occurred in:
> ### Name: dtwSP
> ### Title: Calculate DTW alignment of two snow profiles
> ### Aliases: dtwSP
>
> ### ** Examples
>
>
> ## Align a modeled and a manual snow profile, primarily based on default settings:
> dtwAlignment <- dtwSP(SPpairs$A_modeled, SPpairs$A_manual, open.end = FALSE)
Error in r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0] :
non-numeric argument to binary operator
Calls: dtwSP ... format_snowprofileLayers -> snowprofileLayers -> diff -> diff.default
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.0.2
Check: tests
Result: ERROR
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(sarp.snowprofile.alignment)
Loading required package: sarp.snowprofile
>
> test_check("sarp.snowprofile.alignment")
Saving _problems/test-distanceSP-8.R
Saving _problems/test-dtwSP-8.R
Saving _problems/test-dtwSP-19.R
Saving _problems/test-dtwSP-31.R
Saving _problems/test-dtwSP-42.R
Saving _problems/test-dtwSP-54.R
Saving _problems/test-dtwSP-77.R
Saving _problems/test-dtwSP-112.R
Saving _problems/test-dtwSP-124.R
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-distanceSP.R:5:3'): simSP calculated as anticipated ────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-distanceSP.R:5:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:5:3'): resampled, uneven (nL_q > nL_r), bottom.up (i.e., layer-tracking) ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:5:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:16:3'): resampled, uneven (nL_q > nL_r), top.down ──────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:16:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:28:3'): resampled, uneven (nL_q < nL_r), bottom.up (i.e., layer-tracking) ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:28:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:39:3'): resampled, uneven (nL_q < nL_r), top.down ──────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:39:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:51:3'): rescaled and resampled, top.down ───────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:51:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:74:3'): resampled, uneven, best match ──────────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:74:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:109:3'): resampled, uneven, bottom.up ──────────────────
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:109:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
── Error ('test-dtwSP.R:122:3'): resampled, uneven, top.down, unobservedBasalLayer, warp:jminTopDown ──
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`: non-numeric argument to binary operator
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...) at test-dtwSP.R:122:3
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'averaging.Rmd' using rmarkdown
Quitting from averaging.Rmd:45-52 [avgSPcalc]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `averageSP()`:
! Can't find an average profile!
---
Backtrace:
▆
1. └─sarp.snowprofile.alignment::averageSP(SPgroup2, n = 1, progressbar = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'averaging.Rmd' failed with diagnostics:
Can't find an average profile!
--- failed re-building 'averaging.Rmd'
--- re-building 'clustering.Rmd' using rmarkdown
Quitting from clustering.Rmd:91-94 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `hclust()`:
! NA/NaN/Inf in foreign function call (arg 10)
---
Backtrace:
▆
1. └─sarp.snowprofile.alignment::clusterSP(...)
2. ├─base::do.call("hclust", c(list(d = distmat), config$args_cluster))
3. └─stats::hclust(d = `<dist[,5]>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'clustering.Rmd' failed with diagnostics:
NA/NaN/Inf in foreign function call (arg 10)
--- failed re-building 'clustering.Rmd'
--- re-building 'technical-details.Rmd' using rmarkdown
--- finished re-building 'technical-details.Rmd'
--- re-building 'workflow.Rmd' using rmarkdown
Quitting from workflow.Rmd:38-41 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `r[i1] - r[if (lag < (len <- length(r))) -len:-(len - lag + 1L) else i0]`:
! non-numeric argument to binary operator
---
Backtrace:
▆
1. └─sarp.snowprofile.alignment::dtwSP(...)
2. └─sarp.snowprofile.alignment::resampleSP(ref, h = resamplingRate)
3. └─sarp.snowprofile::snowprofileLayers(...)
4. └─sarp.snowprofile::format_snowprofileLayers(...)
5. └─sarp.snowprofile::snowprofileLayers(validate = FALSE, dropNAs = FALSE)
6. ├─base::diff(sapply(entries[!is.na(entries)], length))
7. └─base::diff.default(sapply(entries[!is.na(entries)], length))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'workflow.Rmd' failed with diagnostics:
non-numeric argument to binary operator
--- failed re-building 'workflow.Rmd'
SUMMARY: processing the following files failed:
'averaging.Rmd' 'clustering.Rmd' 'workflow.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13