Last updated on 2025-12-07 11:50:19 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 11.46 | 435.07 | 446.53 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 7.82 | 192.60 | 200.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 26.00 | 678.10 | 704.10 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 23.00 | 655.76 | 678.76 | OK | |
| r-devel-windows-x86_64 | 1.2.0 | 12.00 | 359.00 | 371.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | 10.61 | 415.76 | 426.37 | OK | |
| r-release-linux-x86_64 | 1.2.0 | 10.64 | 418.48 | 429.12 | OK | |
| r-release-macos-arm64 | 1.2.0 | OK | ||||
| r-release-macos-x86_64 | 1.2.0 | 19.00 | 245.00 | 264.00 | OK | |
| r-release-windows-x86_64 | 1.2.0 | 13.00 | 368.00 | 381.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.2.0 | 12.00 | 244.00 | 256.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.0 | 20.00 | 489.00 | 509.00 | OK |
Version: 1.2.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'knitr', 'rmarkdown', 'spelling', 'tidycmprsk'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.0
Check: examples
Result: ERROR
Running examples in ‘ggsurvfit-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggsurvfit_options
> ### Title: Global Options
> ### Aliases: ggsurvfit_options
>
> ### ** Examples
>
> options("ggsurvfit.switch-color-linetype" = TRUE)
> library(tidycmprsk)
Error in library(tidycmprsk) : there is no package called ‘tidycmprsk’
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
add_risktable 4.827 0.074 5.957
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [107s/133s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(ggsurvfit)
Loading required package: ggplot2
>
> test_check("ggsurvfit")
Saving _problems/test-add_legend_title-62.R
Saving _problems/test-add_legend_title-66.R
! `add_pvalue()` works with objects created with `survfit2()` or `tidycmprsk::cuminc()`.
i `add_pvalue()` has been ignored.
Saving _problems/test-add_pvalue-44.R
Saving _problems/test-ggsurvfit_options-10.R
Saving _problems/test-ggsurvfit_options-11.R
Saving _problems/test-ggsurvfit_options-20.R
Saving _problems/test-ggsurvfit_options-21.R
Saving _problems/test-ggsurvfit_options-30.R
Saving _problems/test-ggsurvfit_options-31.R
Saving _problems/test-ggsurvfit_options-41.R
Saving _problems/test-ggsurvfit_options-42.R
Saving _problems/test-ggsurvfit_options-45.R
Saving 7 x 7 in image
Saving 7 x 7 in image
Saving _problems/test-grid.draw_ggsurvfit-25.R
! Setting start time to -499.835728952772.
i Specify `ggsurvfit::survfit2(start.time)` to override this default.
[ FAIL 13 | WARN 0 | SKIP 22 | PASS 192 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• On CRAN (13): 'test-add_censor_mark.R:5:1',
'test-add_confidence_interval.R:5:1', 'test-add_pvalue.R:76:1',
'test-add_quantile.R:5:1', 'test-add_risktable.R:5:1',
'test-add_risktable_strata_symbol.R:1:1', 'test-ggsurvfit.R:5:1',
'test-ggsurvfit.R:142:1', 'test-ggsurvfit.R:188:1',
'test-stat_stepribbon.R:1:1', 'test-survfit2_p.R:31:1',
'test-theme_risktable.R:5:1', 'test-tidy_survfit.R:209:1'
• {tidycmprsk} is not installed. (9): 'test-add_censor_mark.R:29:1',
'test-add_confidence_interval.R:50:1', 'test-add_pvalue.R:47:3',
'test-add_quantile.R:145:1', 'test-add_risktable.R:146:1',
'test-ggcuminc.R:1:1', 'test-tidy_cuminc.R:1:1', 'test-tidy_survfit.R:133:3',
'test-tidy_survfit.R:232:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-add_legend_title.R:55:3'): add_legend_title() works ──────────
Expected `... <- NULL` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-add_legend_title.R:55:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% ...
8. ├─ggsurvfit::ggcuminc(., outcome = c("death from cancer", "death other causes"))
9. └─base::loadNamespace(x)
10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
11. └─base (local) withOneRestart(expr, restarts[[1L]])
12. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-add_legend_title.R:63:3'): add_legend_title() works ────────────
Error in `eval(code, test_env)`: object 'cuminc1' not found
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-add_legend_title.R:63:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─ggplot2::ggplot_build(cuminc1)
5. └─ggplot2:::try_prop(plot, "plot_env")
6. └─S7::S7_inherits(object)
── Failure ('test-add_pvalue.R:36:3'): add_pvalue() works ──────────────────────
Expected `... <- NULL` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-add_pvalue.R:36:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% ggcuminc(outcome = "death from cancer")
8. ├─ggsurvfit::ggcuminc(., outcome = "death from cancer")
9. └─base::loadNamespace(x)
10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
11. └─base (local) withOneRestart(expr, restarts[[1L]])
12. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-ggsurvfit_options.R:3:3'): ggsurvfit.switch-color-linetype option works ──
Expected `... <- NULL` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ggsurvfit_options.R:3:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% ...
8. ├─ggsurvfit::ggcuminc(., outcome = c("death from cancer", "death other causes"))
9. └─base::loadNamespace(x)
10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
11. └─base (local) withOneRestart(expr, restarts[[1L]])
12. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-ggsurvfit_options.R:11:3'): ggsurvfit.switch-color-linetype option works ──
Expected `print(ggci_strata_outcomes)` not to throw any errors.
Actually got a <simpleError> with message:
object 'ggci_strata_outcomes' not found
Backtrace:
▆
1. ├─testthat::expect_error(print(ggci_strata_outcomes), NA) at test-ggsurvfit_options.R:11:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─base::print(ggci_strata_outcomes)
── Failure ('test-ggsurvfit_options.R:13:3'): ggsurvfit.switch-color-linetype option works ──
Expected `... <- NULL` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ggsurvfit_options.R:13:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% ...
8. ├─ggsurvfit::ggcuminc(., outcome = c("death from cancer", "death other causes"))
9. └─base::loadNamespace(x)
10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
11. └─base (local) withOneRestart(expr, restarts[[1L]])
12. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-ggsurvfit_options.R:21:3'): ggsurvfit.switch-color-linetype option works ──
Expected `print(ggci_outcomes)` not to throw any errors.
Actually got a <simpleError> with message:
object 'ggci_outcomes' not found
Backtrace:
▆
1. ├─testthat::expect_error(print(ggci_outcomes), NA) at test-ggsurvfit_options.R:21:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─base::print(ggci_outcomes)
── Failure ('test-ggsurvfit_options.R:23:3'): ggsurvfit.switch-color-linetype option works ──
Expected `... <- NULL` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ggsurvfit_options.R:23:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─... %>% ggcuminc()
8. ├─ggsurvfit::ggcuminc(.)
9. └─base::loadNamespace(x)
10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
11. └─base (local) withOneRestart(expr, restarts[[1L]])
12. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-ggsurvfit_options.R:31:3'): ggsurvfit.switch-color-linetype option works ──
Expected `print(ggci_strata)` not to throw any errors.
Actually got a <simpleError> with message:
object 'ggci_strata' not found
Backtrace:
▆
1. ├─testthat::expect_error(print(ggci_strata), NA) at test-ggsurvfit_options.R:31:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─base::print(ggci_strata)
── Failure ('test-ggsurvfit_options.R:34:3'): ggsurvfit.switch-color-linetype option works ──
Expected `... <- NULL` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─stats::model.frame(formula = Surv(ttdeath, death_cr) ~ 1, data = tidycmprsk::trial)
2. ├─stats::model.frame.default(...)
3. │ └─base::is.data.frame(data)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Failure ('test-ggsurvfit_options.R:42:3'): ggsurvfit.switch-color-linetype option works ──
Expected `print(ggci_outcomes_linetype)` not to throw any errors.
Actually got a <simpleError> with message:
object 'ggci_outcomes_linetype' not found
Backtrace:
▆
1. ├─testthat::expect_error(print(ggci_outcomes_linetype), NA) at test-ggsurvfit_options.R:42:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─base::print(ggci_outcomes_linetype)
── Error ('test-ggsurvfit_options.R:45:3'): ggsurvfit.switch-color-linetype option works ──
Error in `eval(code, test_env)`: object 'ggci_strata_outcomes' not found
Backtrace:
▆
1. └─vdiffr::expect_doppelganger("ggci_strata_outcomes", ggci_strata_outcomes) at test-ggsurvfit_options.R:45:3
2. └─vdiffr (local) writer(fig, testcase, title)
3. └─vdiffr:::print_plot(plot, title)
── Failure ('test-grid.draw_ggsurvfit.R:17:3'): grid.draw() works ──────────────
Expected `save_image_png(...)` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'tidycmprsk'
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-grid.draw_ggsurvfit.R:17:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─ggsurvfit (local) save_image_png(...)
8. │ └─ggplot2::ggsave(filename = path, plot = x) at test-grid.draw_ggsurvfit.R:4:5
9. │ └─ggplot2:::get_plot_background(plot, bg)
10. │ └─rlang::is_bare_list(plot)
11. ├─... %>% ggcuminc(outcome = "death from cancer")
12. ├─ggsurvfit::ggcuminc(., outcome = "death from cancer")
13. └─base::loadNamespace(x)
14. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
15. └─base (local) withOneRestart(expr, restarts[[1L]])
16. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 13 | WARN 0 | SKIP 22 | PASS 192 ]
Deleting unused snapshots:
'add_censor_mark/cuminc1-censor-mark-all-outcomes.svg',
'add_censor_mark/cuminc1-censor-mark.svg',
'add_censor_mark/cuminc2-censor-mark-all-outcomes.svg',
'add_censor_mark/cuminc2-censor-mark.svg',
'add_censor_mark/cuminc3-censor-mark-all-outcomes.svg',
'add_censor_mark/cuminc3-censor-mark.svg',
'add_confidence_interval/cuminc1-confidence-interval-all-outcomes.svg',
'add_confidence_interval/cuminc1-confidence-interval.svg',
'add_confidence_interval/cuminc2-confidence-interval-all-outcomes.svg',
'add_confidence_interval/cuminc2-confidence-interval.svg',
'add_confidence_interval/cuminc3-confidence-interval-all-outcomes.svg',
'add_confidence_interval/cuminc3-confidence-interval.svg',
'add_pvalue/cuminc2-pvalue.svg', 'add_pvalue/sf2-pvalue-annotation-risk.svg',
'add_pvalue/sf2-pvalue-annotation.svg', 'add_pvalue/sf2-pvalue-caption.svg',
'add_pvalue/sf2-pvalue-with-survfit.svg',
'add_quantile/cuminc1-quantile-all-outcomes.svg', …,
'ggsurvfit_options/ggci-outcomes.svg', and 'ggsurvfit_options/ggci-strata.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc