Last updated on 2026-03-06 05:51:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 68.11 | 421.25 | 489.36 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 0.27 | 2.98 | 3.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 118.00 | 631.09 | 749.09 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 130.00 | 641.54 | 771.54 | ERROR | |
| r-devel-macos-arm64 | 0.1.0 | 18.00 | 98.00 | 116.00 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 78.00 | 345.00 | 423.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 61.36 | 404.08 | 465.44 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 63.95 | 398.30 | 462.25 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 41.00 | 337.00 | 378.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 70.00 | 348.00 | 418.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 44.00 | 305.00 | 349.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 90.00 | 470.00 | 560.00 | OK |
Version: 0.1.0
Check: package dependencies
Result: ERROR
Packages required but not available: 'snpStats', 'VariantAnnotation'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘BiocManager’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘gpcp-Ex.R’ failed
The error most likely occurred in:
> ### Name: runGPCP
> ### Title: Genomic Prediction of Cross Performance This function performs
> ### genomic prediction of cross performance using genotype and phenotype
> ### data.
> ### Aliases: runGPCP
>
> ### ** Examples
>
> # Load phenotype data from CSV
> phenotypeFile <- read.csv(system.file("extdata", "phenotypeFile.csv", package = "gpcp"))
> genotypeFile <- system.file("extdata", "genotypeFile_Chr9and11.vcf", package = "gpcp")
> finalcrosses <- runGPCP(
+ phenotypeFile = phenotypeFile,
+ genotypeFile = genotypeFile,
+ genotypes = "Accession",
+ traits = "YIELD,DMC",
+ weights = c(3, 1),
+ userFixed = "LOC,REP",
+ Ploidy = 2,
+ NCrosses = 150
+ )
Error in runGPCP(phenotypeFile = phenotypeFile, genotypeFile = genotypeFile, :
The 'snpStats' package is required but not installed. Please install it using BiocManager::install('snpStats').
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc