Last updated on 2026-08-13 17:51:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | OK | |||||
| r-devel-linux-x86_64-debian-gcc | 0.9.0 | 15.62 | 169.75 | 185.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.0 | 16.00 | 162.09 | 178.09 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.9.0 | 15.00 | 162.91 | 177.91 | OK | |
| r-devel-windows-x86_64 | 0.9.0 | 24.00 | 226.00 | 250.00 | OK | |
| r-patched-linux-x86_64 | 0.9.0 | 22.82 | 228.37 | 251.19 | OK | |
| r-release-linux-x86_64 | 0.9.0 | 19.66 | 226.73 | 246.39 | OK | |
| r-release-macos-arm64 | 0.9.0 | 6.00 | 61.00 | 67.00 | OK | |
| r-release-macos-x86_64 | 0.9.0 | 15.00 | 347.00 | 362.00 | OK | |
| r-release-windows-x86_64 | 0.9.0 | 26.00 | 225.00 | 251.00 | OK | |
| r-oldrel-macos-arm64 | 0.9.0 | 5.00 | 60.00 | 65.00 | OK | |
| r-oldrel-macos-x86_64 | 0.9.0 | 14.00 | 250.00 | 264.00 | OK | |
| r-oldrel-windows-x86_64 | 0.9.0 | 33.00 | 284.00 | 317.00 | OK |
Version: 0.9.0
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [43s/26s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(iRfcb)
>
> test_check("iRfcb")
Starting 2 test processes.
> test-ifcb_create_manifest.R: v MANIFEST.txt has been created at '/home/hornik/tmp/scratch/Rtmp9LMlkY/mock_dir/test_data/MANIFEST.txt'
> test-ifcb_create_manifest.R: v MANIFEST.txt has been created at '/home/hornik/tmp/scratch/Rtmp9LMlkY/mock_dir/test_data/MANIFEST.txt'
> test-ifcb_create_manifest.R: v MANIFEST.txt has been created at '/home/hornik/tmp/scratch/Rtmp9LMlkY/mock_dir/test_data/MANIFEST.txt'
> test-ifcb_download_whoi_plankton.R: v Download and extraction complete.
> test-ifcb_extract_biovolumes.R: Reading feature files...
> test-ifcb_list_dashboard_bins.R: Fetching bin list from <https://example.invalid/api/list_bins?dataset=mvco>
> test-ifcb_read_hdr_data.R: v Processing completed.
> test-ifcb_read_hdr_data.R: Found 1 '.hdr' file.
Saving _problems/test-ifcb_save_classification-7.R
Saving _problems/test-ifcb_save_classification-35.R
> test-ifcb_zip_matlab.R: Listing all files...
> test-ifcb_zip_matlab.R: Copying manual files...
> test-ifcb_zip_matlab.R: Copying feature files...
> test-ifcb_zip_matlab.R: Copying data files...
> test-ifcb_zip_matlab.R: Copying class2use file...
> test-ifcb_zip_matlab.R: Creating README file...
> test-ifcb_zip_matlab.R: Creating MANIFEST.txt...
> test-ifcb_zip_matlab.R: Creating zip archive...
> test-ifcb_zip_matlab.R: v Zip archive created: '/home/hornik/tmp/scratch/Rtmp9LMlkY/ifcb_zip_matlab/output/test_output.zip'
> test-ifcb_zip_matlab.R: The zip file is already smaller than the specified max size (500 MB).
> test-ifcb_zip_pngs.R: Creating README file...
> test-ifcb_zip_pngs.R: Creating MANIFEST.txt...
> test-ifcb_zip_pngs.R: Creating zip archive...
> test-ifcb_zip_pngs.R: v Zip archive created: '/home/hornik/tmp/scratch/Rtmp9LMlkY/ifcb_zip_pngs/test_output.zip'
> test-ifcb_zip_pngs.R: Creating README file...
> test-ifcb_zip_pngs.R: Creating MANIFEST.txt...
> test-ifcb_zip_pngs.R: Creating zip archive...
> test-ifcb_zip_pngs.R: v Zip archive created: '/home/hornik/tmp/scratch/Rtmp9LMlkY/ifcb_zip_pngs/test_output.zip'
> test-ifcb_zip_pngs.R: '/home/hornik/tmp/scratch/Rtmp9LMlkY/ifcb_zip_pngs/test_output.zip' is larger than 1e-07 MB. Splitting the zip file into smaller parts...
> test-ifcb_zip_pngs.R: v Created 1 smaller zip file:
> test-ifcb_zip_pngs.R: '/home/hornik/tmp/scratch/Rtmp9LMlkY/ifcb_zip_pngs/test_output_part_1.zip'
> test-ifcb_zip_pngs.R: Creating README file...
> test-ifcb_zip_pngs.R: Creating MANIFEST.txt...
> test-ifcb_zip_pngs.R: Creating zip archive...
> test-ifcb_zip_pngs.R: v Zip archive created: '/home/hornik/tmp/scratch/Rtmp9LMlkY/ifcb_zip_pngs/test_output.zip'
[ FAIL 2 | WARN 0 | SKIP 81 | PASS 316 ]
══ Skipped tests (81) ══════════════════════════════════════════════════════════
• On CRAN (41): 'test-get_latest_github_release.R:2:3',
'test-get_latest_github_release.R:18:3', 'test-ifcb_classify_models.R:4:3',
'test-ifcb_classify_sample.R:110:3', 'test-ifcb_classify_images.R:9:3',
'test-ifcb_classify_images.R:126:3', 'test-ifcb_classify_images.R:161:3',
'test-ifcb_download_dashboard_data.R:4:3',
'test-ifcb_download_dashboard_metadata.R:3:3',
'test-ifcb_download_test_data.R:3:3',
'test-ifcb_extract_annotated_images.R:2:3',
'test-ifcb_extract_annotated_images.R:61:3',
'test-ifcb_extract_biovolumes.R:18:3',
'test-ifcb_extract_biovolumes.R:112:3',
'test-ifcb_extract_biovolumes.R:130:3',
'test-ifcb_extract_biovolumes.R:165:3',
'test-ifcb_extract_biovolumes.R:202:3',
'test-ifcb_extract_classified_images.R:2:3',
'test-ifcb_extract_classified_images.R:67:3',
'test-ifcb_extract_classified_images.R:103:3',
'test-ifcb_extract_classified_images.R:138:3',
'test-ifcb_extract_classified_images.R:172:3',
'test-ifcb_extract_classified_images.R:211:3',
'test-ifcb_extract_pngs.R:2:3', 'test-ifcb_get_runtime.R:59:3',
'test-ifcb_is_diatom.R:3:3', 'test-ifcb_is_diatom.R:22:3',
'test-ifcb_is_diatom.R:50:3', 'test-ifcb_is_near_land.R:3:3',
'test-ifcb_is_near_land.R:25:3', 'test-ifcb_is_near_land.R:46:3',
'test-ifcb_list_dashboard_bins.R:12:3', 'test-ifcb_match_taxa_names.R:3:3',
'test-ifcb_match_taxa_names.R:22:3', 'test-ifcb_py_install.R:3:3',
'test-ifcb_py_install.R:35:3', 'test-ifcb_save_classification.R:292:3',
'test-ifcb_save_classification.R:426:3',
'test-ifcb_summarize_biovolumes.R:13:3',
'test-ifcb_summarize_biovolumes.R:65:3', 'test-ifcb_which_basin.R:37:3'
• Python not available for testing (CRAN) (4):
'test-ifcb_extract_features.R:3:3', 'test-ifcb_extract_features.R:50:3',
'test-ifcb_extract_features.R:112:3', 'test-ifcb_extract_features.R:134:3'
• scipy not available for testing (CRAN) (27):
'test-ifcb_adjust_classes.R:3:3', 'test-ifcb_annotate_batch.R:4:3',
'test-ifcb_annotate_batch.R:66:3', 'test-ifcb_annotate_samples.R:3:3',
'test-ifcb_annotate_samples.R:50:3', 'test-ifcb_annotate_samples.R:108:3',
'test-ifcb_correct_annotation.R:3:3', 'test-ifcb_correct_annotation.R:67:3',
'test-ifcb_correct_annotation.R:122:3',
'test-ifcb_correct_annotation.R:181:3', 'test-ifcb_create_class2use.R:3:3',
'test-ifcb_create_empty_manual_file.R:3:3',
'test-ifcb_create_empty_manual_file.R:20:3',
'test-ifcb_create_manual_file.R:5:3', 'test-ifcb_create_manual_file.R:27:3',
'test-ifcb_get_mat_names.R:28:3', 'test-ifcb_merge_manual.R:3:3',
'test-ifcb_merge_manual.R:68:3', 'test-ifcb_prepare_whoi_plankton.R:3:3',
'test-ifcb_prepare_whoi_plankton.R:124:3', 'test-ifcb_psd.R:3:3',
'test-ifcb_replace_mat_values.R:3:3', 'test-ifcb_replace_mat_values.R:46:3',
'test-ifcb_replace_mat_values.R:59:3', 'test-ifcb_replace_mat_values.R:82:3',
'test-ifcb_replace_mat_values.R:108:3', 'test-ifcb_read_summary.R:40:3'
• {hdf5r} is not installed (9): 'test-ifcb_save_classification.R:41:3',
'test-ifcb_save_classification.R:205:3', 'test-read_class_file.R:46:3',
'test-read_class_file.R:66:3', 'test-read_class_file.R:80:3',
'test-read_class_file.R:136:3', 'test-read_class_file.R:151:3',
'test-read_class_file.R:162:3', 'test-read_class_file.R:173:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ifcb_save_classification.R:4:3'): ifcb_save_classification errors when roi_file does not exist ──
Error in `ifcb_save_classification("nonexistent.roi", output_folder = tempdir())`: Package hdf5r is required for `format = "h5"`.
i Install it with `install.packages("hdf5r")`
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ifcb_save_classification.R:4:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─iRfcb::ifcb_save_classification("nonexistent.roi", output_folder = tempdir())
8. └─cli::cli_abort(...)
9. └─rlang::abort(...)
── Error ('test-ifcb_save_classification.R:32:3'): ifcb_save_classification errors when no PNGs are extracted ──
Error in `ifcb_save_classification(fake_roi, output_folder = tempdir(), verbose = FALSE)`: Package hdf5r is required for `format = "h5"`.
i Install it with `install.packages("hdf5r")`
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-ifcb_save_classification.R:32:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─iRfcb::ifcb_save_classification(fake_roi, output_folder = tempdir(), verbose = FALSE)
8. └─cli::cli_abort(...)
9. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 81 | PASS 316 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc