Last updated on 2024-07-27 11:49:23 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| pubh | 5 | 1 | 7 |
Current CRAN status: ERROR: 5, NOTE: 1, OK: 7
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Bernard 6.048 0.197 8.572
Vanderpump 6.058 0.038 7.528
Rothman 5.682 0.080 7.104
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11550 bytes
Input file size = 11640 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9725
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9725
Output IDAT size = 9725 bytes (1825 bytes decrease)
Output file size = 9803 bytes (1837 bytes = 15.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11914 bytes
Input file size = 12004 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9939
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9939
Output IDAT size = 9939 bytes (1975 bytes decrease)
Output file size = 10017 bytes (1987 bytes = 16.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10052 bytes
Input file size = 10142 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9175
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8941
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8941
Output IDAT size = 8941 bytes (1111 bytes decrease)
Output file size = 9019 bytes (1123 bytes = 11.07% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10317 bytes
Input file size = 10407 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9226
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9206
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9206
Output IDAT size = 9206 bytes (1111 bytes decrease)
Output file size = 9284 bytes (1123 bytes = 10.79% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13038 bytes
Input file size = 13128 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11210
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11210
Output IDAT size = 11210 bytes (1828 bytes decrease)
Output file size = 11288 bytes (1840 bytes = 14.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13956 bytes
Input file size = 14046 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11937
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11937
Output IDAT size = 11937 bytes (2019 bytes decrease)
Output file size = 12015 bytes (2031 bytes = 14.46% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15151 bytes
Input file size = 15241 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11938
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11938
Output IDAT size = 11938 bytes (3213 bytes decrease)
Output file size = 12016 bytes (3225 bytes = 21.16% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
bar_error.Rd: gf_summary
bland_altman.Rd: gf_point
box_plot.Rd: gf_boxplot
gf_star.Rd: gf_text
hist_norm.Rd: gf_dhistogram
mhor.Rd: mh
qq_plot.Rd: gf_qq, gf_line
strip_error.Rd: gf_point, gf_jitter
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Bernard 4.382 0.182 9.029
Vanderpump 4.473 0.053 7.770
Rothman 4.248 0.053 8.393
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11450 bytes
Input file size = 11540 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9665
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9665
Output IDAT size = 9665 bytes (1785 bytes decrease)
Output file size = 9743 bytes (1797 bytes = 15.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12059 bytes
Input file size = 12149 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10081
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10081
Output IDAT size = 10081 bytes (1978 bytes decrease)
Output file size = 10159 bytes (1990 bytes = 16.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10091 bytes
Input file size = 10181 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9130
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9009
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9009
Output IDAT size = 9009 bytes (1082 bytes decrease)
Output file size = 9087 bytes (1094 bytes = 10.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10351 bytes
Input file size = 10441 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9252
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9236
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9236
Output IDAT size = 9236 bytes (1115 bytes decrease)
Output file size = 9314 bytes (1127 bytes = 10.79% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12861 bytes
Input file size = 12951 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11000
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11000
Output IDAT size = 11000 bytes (1861 bytes decrease)
Output file size = 11078 bytes (1873 bytes = 14.46% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13861 bytes
Input file size = 13951 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11854
Output IDAT size = 11854 bytes (2007 bytes decrease)
Output file size = 11932 bytes (2019 bytes = 14.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15257 bytes
Input file size = 15347 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11866
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11866
Output IDAT size = 11866 bytes (3391 bytes decrease)
Output file size = 11944 bytes (3403 bytes = 22.17% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-oldrel-windows-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11364 bytes
Input file size = 11454 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9637
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9637
Output IDAT size = 9637 bytes (1727 bytes decrease)
Output file size = 9715 bytes (1739 bytes = 15.18% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12087 bytes
Input file size = 12177 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10049
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10049
Output IDAT size = 10049 bytes (2038 bytes decrease)
Output file size = 10127 bytes (2050 bytes = 16.84% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10067 bytes
Input file size = 10157 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9117
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8971
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8971
Output IDAT size = 8971 bytes (1096 bytes decrease)
Output file size = 9049 bytes (1108 bytes = 10.91% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10344 bytes
Input file size = 10434 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9245
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9230
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9230
Output IDAT size = 9230 bytes (1114 bytes decrease)
Output file size = 9308 bytes (1126 bytes = 10.79% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13078 bytes
Input file size = 13168 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11150
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11150
Output IDAT size = 11150 bytes (1928 bytes decrease)
Output file size = 11228 bytes (1940 bytes = 14.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13821 bytes
Input file size = 13911 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861
Output IDAT size = 11861 bytes (1960 bytes decrease)
Output file size = 11939 bytes (1972 bytes = 14.18% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15320 bytes
Input file size = 15410 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11898
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11898
Output IDAT size = 11898 bytes (3422 bytes decrease)
Output file size = 11976 bytes (3434 bytes = 22.28% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11535 bytes
Input file size = 11625 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9697
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9697
Output IDAT size = 9697 bytes (1838 bytes decrease)
Output file size = 9775 bytes (1850 bytes = 15.91% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11990 bytes
Input file size = 12080 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10015
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10015
Output IDAT size = 10015 bytes (1975 bytes decrease)
Output file size = 10093 bytes (1987 bytes = 16.45% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9990 bytes
Input file size = 10080 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9089
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8898
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8898
Output IDAT size = 8898 bytes (1092 bytes decrease)
Output file size = 8976 bytes (1104 bytes = 10.95% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10333 bytes
Input file size = 10423 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9243
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9225
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9225
Output IDAT size = 9225 bytes (1108 bytes decrease)
Output file size = 9303 bytes (1120 bytes = 10.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13015 bytes
Input file size = 13105 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11089
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11089
Output IDAT size = 11089 bytes (1926 bytes decrease)
Output file size = 11167 bytes (1938 bytes = 14.79% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13821 bytes
Input file size = 13911 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11838
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11838
Output IDAT size = 11838 bytes (1983 bytes decrease)
Output file size = 11916 bytes (1995 bytes = 14.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15266 bytes
Input file size = 15356 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11891
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11891
Output IDAT size = 11891 bytes (3375 bytes decrease)
Output file size = 11969 bytes (3387 bytes = 22.06% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building 'introduction.Rmd'
--- re-building 'regression.Rmd' using rmarkdown
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building 'regression.Rmd'
SUMMARY: processing the following files failed:
'introduction.Rmd' 'regression.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64