Last updated on 2026-04-01 23:54:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 50.41 | 585.26 | 635.67 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 40.89 | 405.29 | 446.18 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 83.00 | 920.57 | 1003.57 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 85.00 | 927.04 | 1012.04 | OK | |
| r-devel-macos-arm64 | 0.1.2 | 14.00 | 146.00 | 160.00 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 48.00 | 468.00 | 516.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 42.81 | 554.48 | 597.29 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 43.35 | 555.18 | 598.53 | OK | |
| r-release-macos-arm64 | 0.1.2 | 14.00 | 93.00 | 107.00 | ERROR | |
| r-release-macos-x86_64 | 0.1.2 | 33.00 | 240.00 | 273.00 | ERROR | |
| r-release-windows-x86_64 | 0.1.2 | 53.00 | 446.00 | 499.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.2 | 34.00 | 289.00 | 323.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.1.2 | 67.00 | 629.00 | 696.00 | OK |
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘lisat-intro.Rmd’ using rmarkdown
Quitting from lisat-intro.Rmd:107-111 [cis_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000)
2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")]
3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘lisat-intro.Rmd’
SUMMARY: processing the following file failed:
‘lisat-intro.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
Flavor: r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64