CRAN Package Check Results for Package lmmlasso

Last updated on 2019-06-20 05:48:31 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-2 6.07 59.59 65.66 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-2 6.20 47.27 53.47 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-2 81.33 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-2 78.51 NOTE
r-devel-windows-ix86+x86_64 0.1-2 19.00 97.00 116.00 NOTE
r-patched-linux-x86_64 0.1-2 8.54 58.54 67.08 NOTE
r-patched-solaris-x86 0.1-2 121.50 NOTE
r-release-linux-x86_64 0.1-2 7.27 58.74 66.01 NOTE
r-release-windows-ix86+x86_64 0.1-2 21.00 99.00 120.00 NOTE
r-release-osx-x86_64 0.1-2 NOTE
r-oldrel-windows-ix86+x86_64 0.1-2 9.00 96.00 105.00 NOTE
r-oldrel-osx-x86_64 0.1-2 NOTE

Check Details

Version: 0.1-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'emulator' 'methods' 'miscTools' 'penalized'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1-2
Check: R code for possible problems
Result: NOTE
    File 'lmmlasso/R/zzz.R':
     .onAttach calls:
     cat("----------------------------------------------------------------------", "This is a test release of the package 'lmmlasso'. If you have any questions or problems, do not hesitate to contact the author.", "----------------------------------------------------------------------", sep = "\n")
    
    Package startup functions should use 'packageStartupMessage' to
     generate messages.
    See section 'Good practice' in '?.onAttach'.
    
    LambdaInv: no visible global function definition for 'quad.tform'
    MLloglik: no visible global function definition for 'quad.form'
    MLpdDiag: no visible global function definition for 'optimize'
    MLpdDiag: no visible global function definition for 'nlminb'
    MLpdIdent: no visible global function definition for 'optimize'
    MLpdIdent: no visible global function definition for 'nlminb'
    MLpdSym: no visible global function definition for 'triang'
    MLpdSym: no visible global function definition for 'optimize'
    MLpdSym: no visible global function definition for 'nlminb'
    MLpdSym: no visible global function definition for 'vecli'
    MLpdSymLambda: no visible global function definition for 'quad.tform'
    MLsigma: no visible global function definition for 'optimize'
    MLsigma: no visible global function definition for 'nlminb'
    MLsigmaZPsiZt: no visible global function definition for 'quad.tform'
    MedianValue: no visible global function definition for 'median'
    ObjFunction : tResLRes: no visible global function definition for
     'quad.form'
    covStartingValues : optimize3: no visible global function definition
     for 'quad.form.inv'
    covStartingValues: no visible global function definition for 'optimize'
    lmmlasso.default: no visible binding for global variable 'sd'
    lmmlasso.default: no visible global function definition for 'optL1'
    lmmlasso.default: no visible global function definition for 'optL2'
    lmmlasso.default: no visible global function definition for 'vecli'
    lmmlasso.default: no visible global function definition for 'triang'
    lmmlasso.default: no visible global function definition for 'cov2cor'
    plot.lmmlasso: no visible global function definition for 'par'
    plot.lmmlasso: no visible global function definition for 'plot'
    plot.lmmlasso: no visible global function definition for 'abline'
    plot.lmmlasso: no visible global function definition for 'qqnorm'
    plot.lmmlasso: no visible global function definition for 'qqline'
    plot.lmmlasso: no visible global function definition for 'boxplot'
    plot.lmmlasso: no visible global function definition for 'hist'
    plot.lmmlasso: no visible global function definition for 'rug'
    Undefined global functions or variables:
     abline boxplot cov2cor hist median nlminb optL1 optL2 optimize par
     plot qqline qqnorm quad.form quad.form.inv quad.tform rug sd triang
     vecli
    Consider adding
     importFrom("graphics", "abline", "boxplot", "hist", "par", "plot",
     "rug")
     importFrom("stats", "cov2cor", "median", "nlminb", "optimize",
     "qqline", "qqnorm", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'plot.lmmlasso.Rd':
     \examples lines wider than 100 characters:
     fit <- lmmlasso(x=classroomStudy$X,y=classroomStudy$y,z=classroomStudy$Z,grp=classroomStudy$grp,lambda=15,pdMat="pdIdent")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64