Last updated on 2026-04-14 23:56:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.72 | 317.72 | 331.44 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.58 | 280.01 | 290.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 23.00 | 300.78 | 323.78 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 31.00 | 345.52 | 376.52 | OK | |
| r-devel-macos-arm64 | 1.1.4 | 4.00 | 46.00 | 50.00 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 22.00 | 198.00 | 220.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 17.39 | 342.95 | 360.34 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 12.92 | 348.12 | 361.04 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 12.00 | 538.00 | 550.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 18.00 | 0.00 | 18.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 579.00 | 589.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 23.00 | 243.00 | 266.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/488s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.061, elapsed: 2.854 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.804, system: 0.241, elapsed: 17.653 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.023, elapsed: 1.119 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.716, system: 0.820, elapsed: 68.961 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.008, elapsed: 0.366 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.101, system: 1.183, elapsed: 91.959 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.738, system: 0.081, elapsed: 4.130 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.772, system: 0.235, elapsed: 20.266 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.022, elapsed: 1.026 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.224, system: 1.042, elapsed: 157.491 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.007, elapsed: 0.363 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.768, system: 1.491, elapsed: 184.407 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.565, system: 0.038, elapsed: 2.687 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.749, system: 0.112, elapsed: 17.190 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.326, system: 0.022, elapsed: 1.259 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.264, system: 0.941, elapsed: 130.181 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.173 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.284, system: 0.308, elapsed: 1.207 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.085, system: 1.518, elapsed: 153.881 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.628, system: 0.060, elapsed: 1.923 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.456, system: 0.056, elapsed: 11.271 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.017, elapsed: 0.881 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.540, system: 0.768, elapsed: 19.236 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.005, elapsed: 0.206 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.467, system: 0.792, elapsed: 14.652 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.239, system: 1.746, elapsed: 49.033 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/526s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.571, system: 0.045, elapsed: 3.073 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.485, system: 0.069, elapsed: 15.218 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.019, elapsed: 1.103 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.928, system: 0.913, elapsed: 163.698 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.005, elapsed: 0.366 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.932, system: 1.076, elapsed: 184.456 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.615, system: 0.038, elapsed: 3.568 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.826, system: 0.186, elapsed: 21.839 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.023, elapsed: 1.123 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.371, system: 1.151, elapsed: 124.142 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.012, elapsed: 0.367 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.800, system: 1.451, elapsed: 152.342 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.547, system: 0.040, elapsed: 3.280 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.563, system: 0.095, elapsed: 18.292 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.022, elapsed: 0.777 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.654, system: 0.969, elapsed: 18.292 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.157 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.272, system: 0.271, elapsed: 1.660 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 23.330, system: 1.477, elapsed: 43.614 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.709, system: 0.065, elapsed: 3.241 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.902, system: 0.219, elapsed: 16.322 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.020, elapsed: 0.488 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.803, system: 0.877, elapsed: 87.007 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.009, elapsed: 0.341 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 12.226, system: 0.788, elapsed: 27.296 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.811, system: 2.033, elapsed: 135.752 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64