CRAN Package Check Results for Maintainer ‘Martí Català <marti.catalasabate at ndorms.ox.ac.uk>’

Last updated on 2026-03-18 05:53:19 CET.

Package	ERROR	WARN	NOTE	OK
CohortCharacteristics	4	1	2	7
DrugUtilisation				14
OmopConstructor				14
omopgenerics				14
OmopViewer				14
PatientProfiles				14

Package CohortCharacteristics

Current CRAN status: ERROR: 4, WARN: 1, NOTE: 2, OK: 7

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [521s/338s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-16 16:51:37.78582 > test-plotCohortTiming.R: v Summary finished, at 2026-03-16 16:51:38.09366 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-16 16:51:48.982297 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-16 16:51:49.150652 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-16 16:54:17.606092 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-16 16:54:18.133904 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-16 16:54:29.478109 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-16 16:54:30.520784 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x42) [0x7fae81227ef2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x1f) [0x7fae8122d4ef] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0xac) [0x7fae8161276c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x2aa) [0x7fae815f379a] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fae82280d27] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x6a9) [0x7fae822809b9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x38) [0x7fae8227f998] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x70c) [0x7fae815f328c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fae815f2c66] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fae8227f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7fae815f3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fae8227f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7fae815f3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fae8227f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7fae815f3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fae81609035] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fae81608f5b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x561) [0x7fae81f5fa61] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x486) [0x7fae81f60856] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(+0x23e7942) [0x7fae81fe7942] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x89) [0x7fae81f62f79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x186) [0x7fae81f63316] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x104) [0x7fae81f636f4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fae81f75ffe] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x650) [0x7fae805ee5d0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x101) [0x7fae8065db31] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xfb393) [0x7fae9defb393] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14b2c0) [0x7fae9df4b2c0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134384) [0x7fae9df34384] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x26e) [0x7fae9df3394e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134384) [0x7fae9df34384] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d400) [0x7fae9df4d400] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138de2) [0x7fae9df38de2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134384) [0x7fae9df34384] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d400) [0x7fae9df4d400] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138de2) [0x7fae9df38de2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so(+0xb5e3) [0x7fae87ebb5e3] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xf9353) [0x7fae9def9353] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bcfb) [0x7fae9df3bcfb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15627e) [0x7fae9df5627e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15533b) [0x7fae9df5533b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b503) [0x7fae9df3b503] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(R_execMethod+0x2cb) [0x7fae9df53aab] /home/hornik/tmp/R.check/r-devel-clang/Work/build/library/methods/libs/methods.so(+0x458b) [0x7fae9d63758b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19fe7a) [0x7fae9df9fe7a] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b3bd) [0x7fae9df3b3bd] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134aa6) [0x7fae9df34aa6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d3c2) [0x7fae9df9d3c2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cce5) [0x7fae9df9cce5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d91e) [0x7fae9df9d91e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bf7c) [0x7fae9df3bf7c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134aa6) [0x7fae9df34aa6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d3c2) [0x7fae9df9d3c2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cce5) [0x7fae9df9cce5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d91e) [0x7fae9df9d91e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bf7c) [0x7fae9df3bf7c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134aa6) [0x7fae9df34aa6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d3c2) [0x7fae9df9d3c2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cde9) [0x7fae9df9cde9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d91e) [0x7fae9df9d91e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bf7c) [0x7fae9df3bf7c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15627e) [0x7fae9df5627e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15533b) [0x7fae9df5533b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1576e8) [0x7fae9df576e8] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bcfb) [0x7fae9df3bcfb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x157ac8) [0x7fae9df57ac8] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bcfb) [0x7fae9df3bcfb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x42) [0x7fae81227ef2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x1f) [0x7fae8122d4ef] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0xac) [0x7fae8161276c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x2aa) [0x7fae815f379a] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fae82280d27] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x6a9) [0x7fae822809b9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x38) [0x7fae8227f998] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x70c) [0x7fae815f328c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fae815f2c66] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fae8227f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7fae815f3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fae8227f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7fae815f3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fae8227f924] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x701) [0x7fae815f3281] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fae81609035] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fae81608f5b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x561) [0x7fae81f5fa61] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x486) [0x7fae81f60856] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(+0x23e7942) [0x7fae81fe7942] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x89) [0x7fae81f62f79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x186) [0x7fae81f63316] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x104) [0x7fae81f636f4] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fae81f75ffe] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x650) [0x7fae805ee5d0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x101) [0x7fae8065db31] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xfb393) [0x7fae9defb393] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14b2c0) [0x7fae9df4b2c0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134384) [0x7fae9df34384] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x26e) [0x7fae9df3394e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134384) [0x7fae9df34384] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d400) [0x7fae9df4d400] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138de2) [0x7fae9df38de2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134384) [0x7fae9df34384] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x14d400) [0x7fae9df4d400] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x138de2) [0x7fae9df38de2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rlang/libs/rlang.so(+0xb5e3) [0x7fae87ebb5e3] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0xf9353) [0x7fae9def9353] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bcfb) [0x7fae9df3bcfb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15627e) [0x7fae9df5627e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15533b) [0x7fae9df5533b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b503) [0x7fae9df3b503] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(R_execMethod+0x2cb) [0x7fae9df53aab] /home/hornik/tmp/R.check/r-devel-clang/Work/build/library/methods/libs/methods.so(+0x458b) [0x7fae9d63758b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19fe7a) [0x7fae9df9fe7a] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13b3bd) [0x7fae9df3b3bd] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134aa6) [0x7fae9df34aa6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d3c2) [0x7fae9df9d3c2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cce5) [0x7fae9df9cce5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d91e) [0x7fae9df9d91e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bf7c) [0x7fae9df3bf7c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134aa6) [0x7fae9df34aa6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d3c2) [0x7fae9df9d3c2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cce5) [0x7fae9df9cce5] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d91e) [0x7fae9df9d91e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bf7c) [0x7fae9df3bf7c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x134aa6) [0x7fae9df34aa6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d3c2) [0x7fae9df9d3c2] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19cde9) [0x7fae9df9cde9] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x19d91e) [0x7fae9df9d91e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bf7c) [0x7fae9df3bf7c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15627e) [0x7fae9df5627e] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15533b) [0x7fae9df5533b] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x3d0) [0x7fae9df33ab0] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1576e8) [0x7fae9df576e8] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bcfb) [0x7fae9df3bcfb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x15017c) [0x7fae9df5017c] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x5f6) [0x7fae9df33cd6] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x157ac8) [0x7fae9df57ac8] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x13bcfb) [0x7fae9df3bcfb] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x1340fc) [0x7fae9df340fc] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(Rf_eval+0x1a5) [0x7fae9df33885] /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libR.so(+0x150c79) [0x7fae9df50c79] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [397s/254s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-17 13:09:46.008454 > test-plotCohortTiming.R: v Summary finished, at 2026-03-17 13:09:46.258385 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-17 13:09:51.941989 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-17 13:09:52.101617 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-17 13:11:41.413178 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-17 13:11:41.826799 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-17 13:11:50.028641 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-17 13:11:50.895271 Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f184f29c944] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f184f29c971] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f184f29f9e1] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1a9) [0x7f184f5b2559] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x9073cd) [0x7f184e7073cd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f184fe97c38] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x86) [0x7f184fe99966] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f184fe99f2f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x86) [0x7f184f59fae6] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2fa) [0x7f184f59fd5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f184feaaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f184f59fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f184feaaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f184f59fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f184feaaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f184f59fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f184f5a04da] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f184f5a06ca] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x691) [0x7f184fc91a41] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x47a) [0x7f184fc9218a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e92847) [0x7f184fc92847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f184fc6d714] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1be) [0x7f184fc71eee] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f184fc94975] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f184fc94a20] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x444) [0x7f184e9759a4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f184e9f1c7a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x108d6e) [0x7f186b708d6e] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x147660) [0x7f186b747660] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158174) [0x7f186b758174] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f186b757a5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158174) [0x7f186b758174] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158485) [0x7f186b758485] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1503f4) [0x7f186b7503f4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158174) [0x7f186b758174] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158485) [0x7f186b758485] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1503f4) [0x7f186b7503f4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d7f8) [0x7f186858e7f8] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x107053) [0x7f186b707053] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bfa4) [0x7f186b74bfa4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15caed) [0x7f186b75caed] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b43c) [0x7f186b75b43c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c09b) [0x7f186b74c09b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f186b75a9a9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library/methods/libs/methods.so(+0x5ba0) [0x7f18685b1ba0] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a8bb2) [0x7f186b7a8bb2] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x151197) [0x7f186b751197] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b0b9) [0x7f186b75b0b9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6543) [0x7f186b7a6543] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ac7) [0x7f186b7a6ac7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ebc) [0x7f186b7a6ebc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd8f) [0x7f186b74bd8f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b0b9) [0x7f186b75b0b9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6543) [0x7f186b7a6543] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ac7) [0x7f186b7a6ac7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ebc) [0x7f186b7a6ebc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd8f) [0x7f186b74bd8f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b0b9) [0x7f186b75b0b9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6543) [0x7f186b7a6543] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c59) [0x7f186b7a6c59] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ebc) [0x7f186b7a6ebc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd8f) [0x7f186b74bd8f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15caed) [0x7f186b75caed] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b43c) [0x7f186b75b43c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15dfff) [0x7f186b75dfff] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bfa4) [0x7f186b74bfa4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e4c4) [0x7f186b75e4c4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bfa4) [0x7f186b74bfa4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x54) [0x7f184f29c944] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f184f29c971] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x11) [0x7f184f29f9e1] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1a9) [0x7f184f5b2559] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x9073cd) [0x7f184e7073cd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x118) [0x7f184fe97c38] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x86) [0x7f184fe99966] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x3f) [0x7f184fe99f2f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x86) [0x7f184f59fae6] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x2fa) [0x7f184f59fd5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f184feaaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f184f59fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f184feaaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f184f59fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x4d) [0x7f184feaaafd] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b) [0x7f184f59fadb] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x8a) [0x7f184f5a04da] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x2a) [0x7f184f5a06ca] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x691) [0x7f184fc91a41] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x47a) [0x7f184fc9218a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(+0x1e92847) [0x7f184fc92847] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x74) [0x7f184fc6d714] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1be) [0x7f184fc71eee] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xa5) [0x7f184fc94975] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x30) [0x7f184fc94a20] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x444) [0x7f184e9759a4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x19a) [0x7f184e9f1c7a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x108d6e) [0x7f186b708d6e] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x147660) [0x7f186b747660] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158174) [0x7f186b758174] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x35a) [0x7f186b757a5a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158174) [0x7f186b758174] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158485) [0x7f186b758485] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1503f4) [0x7f186b7503f4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158174) [0x7f186b758174] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x158485) [0x7f186b758485] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1503f4) [0x7f186b7503f4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rlang/libs/rlang.so(+0x1d7f8) [0x7f186858e7f8] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x107053) [0x7f186b707053] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bfa4) [0x7f186b74bfa4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15caed) [0x7f186b75caed] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b43c) [0x7f186b75b43c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14c09b) [0x7f186b74c09b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(R_execMethod+0x229) [0x7f186b75a9a9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/library/methods/libs/methods.so(+0x5ba0) [0x7f18685b1ba0] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a8bb2) [0x7f186b7a8bb2] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x151197) [0x7f186b751197] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b0b9) [0x7f186b75b0b9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6543) [0x7f186b7a6543] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ac7) [0x7f186b7a6ac7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ebc) [0x7f186b7a6ebc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd8f) [0x7f186b74bd8f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b0b9) [0x7f186b75b0b9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6543) [0x7f186b7a6543] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ac7) [0x7f186b7a6ac7] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ebc) [0x7f186b7a6ebc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd8f) [0x7f186b74bd8f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b0b9) [0x7f186b75b0b9] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6543) [0x7f186b7a6543] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6c59) [0x7f186b7a6c59] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x1a6ebc) [0x7f186b7a6ebc] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bd8f) [0x7f186b74bd8f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15caed) [0x7f186b75caed] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15b43c) [0x7f186b75b43c] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x537) [0x7f186b757c37] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15dfff) [0x7f186b75dfff] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bfa4) [0x7f186b74bfa4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15985f) [0x7f186b75985f] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15a648) [0x7f186b75a648] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x28a) [0x7f186b75798a] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15e4c4) [0x7f186b75e4c4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x14bfa4) [0x7f186b74bfa4] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(+0x15746b) [0x7f186b75746b] /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libR.so(Rf_eval+0x14b) [0x7f186b75784b] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [14m/11m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-15 19:00:49.871974 > test-plotCohortTiming.R: v Summary finished, at 2026-03-15 19:00:50.882409 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-15 19:01:05.478079 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-15 19:01:05.729515 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-summariseCharacteristics.R: i adding demographics columns > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 19:07:26.86481 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 19:07:28.218159 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-15 19:07:51.705817 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-15 19:07:53.666439 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7fa56e474004] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7fa56e81ef26] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7fa56e801748] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fa56f35cbd7] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7fa56f35c89b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7fa56f35b89a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7fa56e801220] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fa56e800b46] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fa56e815d95] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fa56e815cab] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7fa56f099ac5] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7fa56f09a79b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7fa56f107790] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7fa56f09cc3a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7fa56f09d002] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7fa56f09d3ec] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fa56f0ad77e] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7fa56d90535c] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7fa56d96f6c6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x55930b9ba513] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xda008) [0x55930ba05008] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55930b9f29ae] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7fa5802b77d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x55930b9b84d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce663) [0x55930b9f9663] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x55930ba0d78b] /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7fa582b8275b] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e5da) [0x55930ba595da] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce5e3) [0x55930b9f95e3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b509) [0x55930ba56509] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe6318) [0x55930ba11318] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe66f8) [0x55930ba116f8] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)+0x34) [0x7fa56e474004] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long&, unsigned long&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&&)+0xa6) [0x7fa56e81ef26] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitReplace(duckdb::BoundColumnRefExpression&, duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x298) [0x7fa56e801748] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)+0x1c7) [0x7fa56f35cbd7] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::__1::function<void (duckdb::unique_ptr<duckdb::Expression, std::__1::default_delete<duckdb::Expression>, true>*)> const&)+0x6fb) [0x7fa56f35c89b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x2a) [0x7fa56f35b89a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7c0) [0x7fa56e801220] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0xe6) [0x7fa56e800b46] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x54) [0x7fa56f35b834] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x7b5) [0x7fa56e801215] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x75) [0x7fa56e815d95] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::__1::default_delete<duckdb::LogicalOperator>, true>)+0x2b) [0x7fa56e815cab] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x655) [0x7fa56f099ac5] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x40b) [0x7fa56f09a79b] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(+0x1907790) [0x7fa56f107790] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::__1::function<void ()> const&, bool)+0x8a) [0x7fa56f09cc3a] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x172) [0x7fa56f09d002] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0xbc) [0x7fa56f09d3ec] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::__1::default_delete<duckdb::SQLStatement>, true>)+0x2e) [0x7fa56f0ad77e] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, cpp11::environment)+0x5bc) [0x7fa56d90535c] /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x106) [0x7fa56d96f6c6] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f513) [0x55930b9ba513] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xda008) [0x55930ba05008] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55930b9f29ae] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc83b4) [0x55930b9f33b4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc110) [0x55930ba07110] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc7e9) [0x55930b9f77e9] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x47d3) [0x7fa5802b77d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d4d3) [0x55930b9b84d3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce663) [0x55930b9f9663] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(R_execMethod+0x2cb) [0x55930ba0d78b] /data/gannet/ripley/R/R-clang/library/methods/libs/methods.so(+0x175b) [0x7fa582b8275b] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12e5da) [0x55930ba595da] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xce5e3) [0x55930b9f95e3] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b405) [0x55930ba56405] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc8a86) [0x55930b9f3a86] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12bae2) [0x55930ba56ae2] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b509) [0x55930ba56509] /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12c03e) [0x55930ba5703e] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcf036) [0x55930b9fa036] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe4ea8) [0x55930ba0fea8] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe3feb) [0x55930ba0efeb] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55930b9f2b10] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe6318) [0x55930ba11318] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x55930b9f2d36] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe66f8) [0x55930ba116f8] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcedd4) [0x55930b9f9dd4] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc815c) [0x55930b9f315c] /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55930b9f28e5] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdf979) [0x55930ba0a979] /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdee7c) [0x55930ba09e7c] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 16 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [15m/22m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be calculated: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2026-03-14 19:55:04.387553 > test-plotCohortTiming.R: v Summary finished, at 2026-03-14 19:55:05.876387 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. Saving _problems/test-plotCohortTiming-245.R > test-plotCohortAttrition.R: i The following estimates will be calculated: > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_start_date: min, q25, media > test-plotCohortAttrition.R: n, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2026-03-14 19:55:47.232282 > test-plotCohortAttrition.R: v Summary finished, at 2026-03-14 19:55:47.579412 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result. > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:03.070329 > test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:06.493119 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortTiming.R: i The following estimates will be calculated: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:46.521651 > test-summariseCohortTiming.R: ======>------------------------ 1/5 group-strata combinations @ 2026-03-14 20... > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: ============>------------------ 2/5 group-strata combinations @ 2026-03-14 20... > test-summariseCohortTiming.R: ==============================> 5/5 group-strata combinations @ 2026-03-14 20... > test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:50.528963 Saving _problems/test-summariseCohortTiming-63.R > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:114:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ─── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed] /data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL ── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ────────── Error in `dplyr::collect(x)`: Failed to collect lazy table. Caused by error in `dbSendQuery()`: ! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER) Stack Trace: /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45] /data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed] /data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba] /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb] /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb] This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic. For more information, see https://duckdb.org/docs/stable/dev/internal_errors i Context: rapi_prepare i Error type: INTERNAL [ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1.1
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: doc 3.6Mb help 1.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.1
Check: for code/documentation mismatches
Result: WARN Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd': mockCohortCharacteristics Code: function(con = NULL, writeSchema = NULL, numberIndividuals = 10, ..., seed = NULL) Docs: function(numberIndividuals = 10, ..., source = "local", con = lifecycle::deprecated(), writeSchema = lifecycle::deprecated(), seed = lifecycle::deprecated()) Argument names in docs not in code: source Mismatches in argument names (first 3): Position: 1 Code: con Docs: numberIndividuals Position: 2 Code: writeSchema Docs: ... Position: 3 Code: numberIndividuals Docs: source Mismatches in argument default values: Name: 'con' Code: NULL Docs: lifecycle::deprecated() Name: 'writeSchema' Code: NULL Docs: lifecycle::deprecated() Name: 'seed' Code: NULL Docs: lifecycle::deprecated() Flavor: r-oldrel-macos-x86_64

Package DrugUtilisation

Current CRAN status: OK: 14

Package OmopConstructor

Current CRAN status: OK: 14

Package omopgenerics

Current CRAN status: OK: 14

Package OmopViewer

Current CRAN status: OK: 14

Package PatientProfiles

Current CRAN status: OK: 14