CRAN Package Check Results for Package metaSEM

Last updated on 2021-07-27 23:51:20 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.5.1 17.26 190.70 207.96 OK
r-devel-linux-x86_64-debian-gcc 1.2.5.1 13.87 127.97 141.84 OK
r-devel-linux-x86_64-fedora-clang 1.2.5.1 244.20 OK
r-devel-linux-x86_64-fedora-gcc 1.2.5.1 215.79 OK
r-devel-windows-x86_64 1.2.5.1 26.00 209.00 235.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.2.5.1 OK
r-patched-linux-x86_64 1.2.5.1 17.61 163.85 181.46 OK
r-patched-solaris-x86 1.2.5.1 262.10 ERROR
r-release-linux-x86_64 1.2.5.1 19.68 162.90 182.58 OK
r-release-macos-arm64 1.2.5.1 OK
r-release-macos-x86_64 1.2.5.1 OK
r-release-windows-ix86+x86_64 1.2.5.1 35.00 144.00 179.00 OK
r-oldrel-macos-x86_64 1.2.5.1 OK
r-oldrel-windows-ix86+x86_64 1.2.5.1 27.00 204.00 231.00 OK

Check Details

Version: 1.2.5.1
Check: examples
Result: ERROR
    Running examples in ‘metaSEM-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: BCG
    > ### Title: Dataset on the Effectiveness of the BCG Vaccine for Preventing
    > ### Tuberculosis
    > ### Aliases: BCG
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > data(BCG)
    >
    > ## Univariate meta-analysis on the log of the odds ratio
    > summary( meta(y=ln_OR, v=v_ln_OR, data=BCG,
    + x=cbind(scale(Latitude,scale=FALSE),
    + scale(Year,scale=FALSE))) )
    Error: C stack usage 279483540 is too close to the limit
    Error in running mxModel:
    <simpleError: The job for model 'No predictor' exited abnormally with the error message: User interrupt>
    Error: C stack usage 279483540 is too close to the limit
    Error in running mxModel:
    <simpleError: The job for model 'Meta analysis with ML' exited abnormally with the error message: User interrupt>
    Warning: The job for model 'Meta analysis with ML' exited abnormally with the error message: User interrupt
     Length Class Mode
    message 1 -none- character
    call 0 -none- NULL
    >
    > ## Multivariate meta-analysis on the log of the odds
    > ## The conditional sampling covariance is 0
    > bcg <- meta(y=cbind(ln_Odd_V, ln_Odd_NV), data=BCG,
    + v=cbind(v_ln_Odd_V, cov_V_NV, v_ln_Odd_NV))
    Error: C stack usage 279483540 is too close to the limit
    Error in running mxModel:
    <simpleError: The job for model 'Meta analysis with ML' exited abnormally with the error message: User interrupt>
    Warning: The job for model 'Meta analysis with ML' exited abnormally with the error message: User interrupt
    > summary(bcg)
     Length Class Mode
    message 1 -none- character
    call 0 -none- NULL
    >
    > plot(bcg)
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.2.5.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [14s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(metaSEM)
     Loading required package: OpenMx
     To take full advantage of multiple cores, use:
     mxOption(key='Number of Threads', value=parallel::detectCores()) #now
     Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
     "SLSQP" is set as the default optimizer in OpenMx.
     mxOption(NULL, "Gradient algorithm") is set at "central".
     mxOption(NULL, "Optimality tolerance") is set at "6.3e-14".
     mxOption(NULL, "Gradient iterations") is set at "2".
     >
     > test_check("metaSEM")
     Error: C stack usage 279876756 is too close to the limit
     <simpleError: The job for model 'Asymptotic covariance matrix of correlation matrix' exited abnormally with the error message: User interrupt>
     Error in running mxModel:
     <simpleError: The job for model 'No predictor' exited abnormally with the error message: Non-conformable matrices in horizontal concatenation (cbind). First argument has 3 rows, and argument #2 has 0 rows.>
     Error: C stack usage 279876756 is too close to the limit
     Error in running mxModel:
     <simpleError: The job for model 'Meta analysis with FIML' exited abnormally with the error message: User interrupt>
     Error: C stack usage 279876756 is too close to the limit
     <simpleError: The job for model 'TSSEM1 Correlation' exited abnormally with the error message: User interrupt>
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test_utilities.R:336:5): Cor2DataFrame() works correctly ─────────────
     Error: The job for model 'Asymptotic covariance matrix of correlation matrix' exited abnormally with the error message: User interrupt
     Backtrace:
     █
     1. └─metaSEM::Cor2DataFrame(Nohe15A1$data, Nohe15A1$n) test_utilities.R:336:4
     2. └─metaSEM::asyCov(...)
     3. └─base::mapply(...)
     4. └─(function (x, n, cor.analysis = TRUE, dropNA = FALSE, as.matrix = TRUE, ...
     ── Error (test_utilities.R:546:5): metaFIML() works correctly ──────────────────
     Error: The job for model 'Meta analysis with FIML' exited abnormally with the error message: User interrupt
     Backtrace:
     █
     1. └─metaSEM::metaFIML(y = r, v = r_v, x = JP_alpha, data = Jaramillo05) test_utilities.R:546:4
     ── Error (test_utilities.R:666:5): Handling NA in diagonals in tssem1FEM() correctly ──
     Error: The job for model 'TSSEM1 Correlation' exited abnormally with the error message: User interrupt
     Backtrace:
     █
     1. └─metaSEM::tssem1(Cov = list(C1, C2, C3), n = c(50, 50, 50), method = "FEM") test_utilities.R:666:4
     2. └─metaSEM::tssem1FEM(...)
    
     [ FAIL 3 | WARN 0 | SKIP 0 | PASS 89 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86