Last updated on 2026-03-18 06:54:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 36.32 | 725.37 | 761.69 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 22.29 | 485.07 | 507.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 65.00 | 1131.63 | 1196.63 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 60.00 | 1108.36 | 1168.36 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 40.00 | 543.00 | 583.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 54.64 | 650.15 | 704.79 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 36.28 | 636.99 | 673.27 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 39.00 | 518.00 | 557.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 109.00 | 117.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 25.00 | 405.00 | 430.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 53.00 | 619.00 | 672.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-18 18:36:34.639119: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:34.639336: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:34.642617: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:34.648288: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:34.700036: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:34.700192: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:34.702473: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:34.708604: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:34.715406: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:34.715566: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:34.719995: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:34.734644: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:34.734976: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:34.740471: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:34.740573: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:34.745019: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:34.759935: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:34.760273: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:34.780182: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:34.780297: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:34.784724: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:34.819582: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:34.829026: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:34.8292: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.014275: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.091383: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:35.092434: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:35.124334: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.12445: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.126759: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.132913: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.139928: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.140098: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.144423: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.158767: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:35.159102: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:35.189582: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.189708: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.192225: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.198609: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.211041: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.211227: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.215736: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.230568: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:35.230994: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:35.249866: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.250016: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.252423: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.258463: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.27065: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.270879: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.275424: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.290341: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:35.290674: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:35.308974: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.309111: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.318075: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.324446: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.335634: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.33581: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.339837: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.353648: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:35.35401: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:35.371074: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.371199: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.373353: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.379026: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.389592: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.389773: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.394064: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.409181: embedding
> test_pipeop_isomap.R: 2026-03-18 18:36:35.40955: DONE
> test_pipeop_isomap.R: 2026-03-18 18:36:35.429407: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.429567: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.431909: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.437968: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.456948: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.457069: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.459378: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.465426: Classical Scaling
> test_pipeop_isomap.R: 2026-03-18 18:36:35.471213: Isomap START
> test_pipeop_isomap.R: 2026-03-18 18:36:35.47132: constructing knn graph
> test_pipeop_isomap.R: 2026-03-18 18:36:35.473506: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-18 18:36:35.47945: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [255s/192s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-13 08:43:28.845461: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:28.847543: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:28.866292: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:28.890754: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:28.987498: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:28.987793: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:28.995154: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:29.02112: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:29.052873: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:29.053317: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:29.095102: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:29.160894: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:29.162073: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:29.19258: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:29.207831: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:29.222445: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:29.286114: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:29.287249: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:29.409491: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:29.409779: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:29.429304: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:29.629921: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:29.769934: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:29.770641: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:29.819393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:30.161567: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:30.1682: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:30.371411: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:30.371706: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:30.382024: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:30.42317: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:30.459586: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:30.459993: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:30.489653: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:30.553643: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:30.555385: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:30.755344: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:30.755644: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:30.762712: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:30.788356: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:30.858403: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:30.85883: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:30.879139: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:30.942353: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:30.943436: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:31.042325: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.042616: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.056509: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.07937: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:31.140213: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.140655: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.163161: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.232714: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:31.238185: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:31.341341: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.341646: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.348909: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.380123: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:31.438914: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.439337: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.490663: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.554852: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:31.556156: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:31.659012: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.659317: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.674822: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.706254: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:31.765521: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.765948: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.788062: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.856373: embedding
> test_pipeop_isomap.R: 2026-03-13 08:43:31.857542: DONE
> test_pipeop_isomap.R: 2026-03-13 08:43:31.953006: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:31.953303: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:31.965388: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:31.988951: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:32.100432: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:32.100712: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:32.114565: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:32.143142: Classical Scaling
> test_pipeop_isomap.R: 2026-03-13 08:43:32.178065: Isomap START
> test_pipeop_isomap.R: 2026-03-13 08:43:32.178372: constructing knn graph
> test_pipeop_isomap.R: 2026-03-13 08:43:32.205445: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-13 08:43:32.246025: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_smote.R:10:3', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [235s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-17 11:40:56.856028: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:56.85689: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:56.872799: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:56.896003: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:56.956813: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:56.957515: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:56.969881: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:56.992994: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:57.033335: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:57.034045: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:57.049916: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:57.085753: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:57.087122: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:57.127449: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:57.128091: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:57.150433: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:57.199466: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:57.201614: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:57.335602: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:57.336298: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:57.351653: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:57.461686: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:57.517281: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:57.518254: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:57.568464: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:57.806394: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:57.813598: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:58.000918: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.001398: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.008907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:58.024461: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:58.074269: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.07525: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.096108: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:58.147991: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:58.149722: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:58.380976: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.381699: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.393516: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:58.415908: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:58.492128: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.493123: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.516516: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:58.559042: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:58.570438: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:58.702135: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.702635: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.711984: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:58.733437: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:58.807101: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.807748: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.822343: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:58.868639: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:58.87024: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:58.979418: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:58.979879: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:58.987112: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.008702: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:59.09235: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:59.093288: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:59.116464: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.181043: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:59.18278: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:59.302134: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:59.302788: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:59.313627: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.336304: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:59.415038: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-17 11:40:59.415984: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:59.437276: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.48722: embedding
> test_pipeop_isomap.R: 2026-03-17 11:40:59.488981: DONE
> test_pipeop_isomap.R: 2026-03-17 11:40:59.623255: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:59.62396: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:59.634717: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.657254: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:59.789406: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:59.790098: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:59.81202: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.827135: Classical Scaling
> test_pipeop_isomap.R: 2026-03-17 11:40:59.851852: Isomap START
> test_pipeop_isomap.R: 2026-03-17 11:40:59.852303: constructing knn graph
> test_pipeop_isomap.R: 2026-03-17 11:40:59.859629: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-17 11:40:59.87496: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:3:3',
'test_pipeop_learnercv.R:43:3', 'test_pipeop_learnercv.R:73:3',
'test_pipeop_learnercv.R:92:3', 'test_pipeop_learnercv.R:141:3',
'test_pipeop_learnercv.R:157:3', 'test_pipeop_learnercv.R:203:3',
'test_pipeop_learnercv.R:249:3', 'test_pipeop_learnercv.R:278:3',
'test_pipeop_learnercv.R:332:3', 'test_pipeop_learnercv.R:359:3',
'test_pipeop_learnercv.R:389:3', 'test_pipeop_learnercv.R:399:3',
'test_pipeop_learnercv.R:432:3', 'test_pipeop_learnercv.R:472:3',
'test_pipeop_learnercv.R:481:3', 'test_pipeop_learnercv.R:498:3',
'test_pipeop_learnercv.R:506:3', 'test_pipeop_learnercv.R:530:3',
'test_pipeop_learnercv.R:554:3', 'test_pipeop_learnercv.R:634:3',
'test_pipeop_learnercv.R:654:3', 'test_pipeop_learnercv.R:669:3',
'test_pipeop_learnercv.R:754:3', 'test_pipeop_learnercv.R:799:3',
'test_pipeop_learnercv.R:827:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_typecheck.R:188:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64