Last updated on 2024-09-10 11:53:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 10.01 | 86.15 | 96.16 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 0.25 | 1.69 | 1.94 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 161.58 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 157.90 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.1 | 11.00 | 93.00 | 104.00 | ERROR | |
| r-patched-linux-x86_64 | 2.0.1 | 10.00 | 81.65 | 91.65 | ERROR | |
| r-release-linux-x86_64 | 2.0.1 | 7.77 | 81.49 | 89.26 | ERROR | |
| r-release-macos-arm64 | 2.0.1 | 61.00 | OK | |||
| r-release-macos-x86_64 | 2.0.1 | 141.00 | OK | |||
| r-release-windows-x86_64 | 2.0.1 | 11.00 | 94.00 | 105.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.0.1 | 89.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.1 | 107.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.1 | 14.00 | 112.00 | 126.00 | ERROR |
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘msmtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.107 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘msmtools.Rmd’ using rmarkdown_notangle
Quitting from lines 300-318 [multistate_model] (msmtools.Rmd)
Error: processing vignette 'msmtools.Rmd' failed with diagnostics:
object 'augmented_int' not found
--- failed re-building ‘msmtools.Rmd’
SUMMARY: processing the following file failed:
‘msmtools.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.1
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘msmtools-Ex.R’ failed
The error most likely occurred in:
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.068 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘msmtools.Rmd’ using rmarkdown_notangle
Quitting from lines 300-318 [multistate_model] (msmtools.Rmd)
Error: processing vignette 'msmtools.Rmd' failed with diagnostics:
object 'augmented_int' not found
--- failed re-building ‘msmtools.Rmd’
SUMMARY: processing the following file failed:
‘msmtools.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘msmtools-Ex.R’ failed
The error most likely occurred in:
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.067 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in 'msmtools-Ex.R' failed
The error most likely occurred in:
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.03 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘msmtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.069 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘msmtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.051 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in 'msmtools-Ex.R' failed
The error most likely occurred in:
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.01 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-release-windows-x86_64
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in 'msmtools-Ex.R' failed
The error most likely occurred in:
> ### Name: polish
> ### Title: Remove observations with different states occurring at the same
> ### time
> ### Aliases: polish
>
> ### ** Examples
>
>
> # loading data
> data( hosp )
>
> # augmenting longitudinal data
> hosp_aug = augment( data = hosp, data_key = subj, n_events = adm_number,
+ pattern = label_3, t_start = dateIN, t_end = dateOUT,
+ t_cens = dateCENS )
Warning in augment(data = hosp, data_key = subj, n_events = adm_number, :
no t_death has been passed. Assuming that dateCENS contains both censoring and death times
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking monotonicity of adm_number
Ok, adm_number is monotonic
---
checking label_3 and defining patterns
Ok, detected 3 values
---
augmenting data
Ok, data have been augmented
---
defining dimesions
Ok, dimensions computed
---
adding status flag
status flag has been added successfully
---
adding numeric status flag
numeric status has been added successfully
---
adding sequential status flag
sequential status flag has been added successfully
---
adding variable augmented as new time variable
variables "augmented" and "augmented_int" successfully added and repositioned
---
---------------------------
augment() took: 0.04 sec.
---------------------------
>
> # cleaning any targeted occurrence
> hosp_aug_clean = polish( data = hosp_aug, data_key = subj, pattern = label_3 )
-------------------------------------
# # # # setting everything up # # # #
-------------------------------------
checking label_3 and defining patterns
Ok, detected 3 values
---
Error in polish(data = hosp_aug, data_key = subj, pattern = label_3) :
argument "time" is missing, with no default
Calls: polish -> duplicated -> duplicated.data.table -> eval
Execution halted
Flavor: r-oldrel-windows-x86_64