CRAN Package Check Results for Package mvgam

Last updated on 2024-07-16 17:49:14 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.2 96.83 384.60 481.43 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.2 76.23 281.26 357.49 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.2 635.67 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.2 547.41 NOTE
r-devel-windows-x86_64 1.1.2 72.00 281.00 353.00 NOTE
r-patched-linux-x86_64 1.1.2 65.78 377.09 442.87 NOTE
r-release-linux-x86_64 1.1.2 64.96 374.78 439.74 NOTE
r-release-macos-arm64 1.1.2 161.00 NOTE
r-release-macos-x86_64 1.1.2 348.00 NOTE
r-release-windows-x86_64 1.1.2 68.00 287.00 355.00 NOTE
r-oldrel-macos-arm64 1.1.2 1803.00 ERROR
r-oldrel-macos-x86_64 1.1.2 1803.00 NOTE
r-oldrel-windows-x86_64 1.1.2 95.00 360.00 455.00 NOTE

Check Details

Version: 1.1.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘cmdstanr’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.2
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘cmdstanr’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.2
Check: installed package size
Result: NOTE installed size is 5.4Mb sub-directories of 1Mb or more: R 1.8Mb doc 2.4Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.2
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘data_in_mvgam.Rmd’ ... Number of Fisher Scoring iterations: 5 > summary(gam(y ~ series + s(time, by = series), data = simdat$data_train, + family = poisson())) When sourcing ‘data_in_mvgam.R’: Error: could not find function "gam" Execution halted when running code in ‘nmixtures.Rmd’ ... > plot(mod, type = "smooths", trend_effects = TRUE) > plot_predictions(mod, condition = "species", type = "detection") + + ylab("Pr(detection)") + ylim(c(0, 1)) + theme_classic() + + theme(leg .... [TRUNCATED] When sourcing ‘nmixtures.R’: Error: could not find function "plot_predictions" Execution halted when running code in ‘time_varying_effects.Rmd’ ... make would use clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/src/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/include/" -I"/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c file17568565b2266.cpp -o file17568565b2266.o if test "zfile17568565b2266.o" != "z"; then \ echo clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o file17568565b2266.so file17568565b2266.o '/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \ clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/arm64/lib -o file17568565b2266.so file17568565b2266.o '/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \ fi When sourcing ‘time_varying_effects.R’: Error: invalid connection Execution halted when running code in ‘trend_formulas.Rmd’ ... Chain 4: Chain 1: Iteration: 1 / 1500 [ 0%] (Warmup) Chain 2: Iteration: 1 / 1500 [ 0%] (Warmup) Chain 3: Iteration: 1 / 1500 [ 0%] (Warmup) Chain 4: Iteration: 1 / 1500 [ 0%] (Warmup) Chain 1: Iteration: 100 / 1500 [ 6%] (Warmup) Execution halted ... incomplete output. Crash? ‘data_in_mvgam.Rmd’ using ‘UTF-8’... failed ‘forecast_evaluation.Rmd’ using ‘UTF-8’... [255s/487s] OK ‘mvgam_overview.Rmd’ using ‘UTF-8’... [235s/271s] OK ‘nmixtures.Rmd’ using ‘UTF-8’... failed ‘shared_states.Rmd’ using ‘UTF-8’... [171s/123s] OK ‘time_varying_effects.Rmd’ using ‘UTF-8’... failed ‘trend_formulas.Rmd’ using ‘UTF-8’... failed to complete the test * checking re-building of vignette outputs ...* using check arguments '--no-clean-on-error ' Flavor: r-oldrel-macos-arm64