Last updated on 2026-02-08 23:50:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.1 | 11.04 | 134.14 | 145.18 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.1 | 6.96 | 86.64 | 93.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.1 | 20.00 | 186.17 | 206.17 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.6.1 | 21.00 | 216.56 | 237.56 | OK | |
| r-devel-windows-x86_64 | 0.6.1 | 14.00 | 169.00 | 183.00 | OK | |
| r-patched-linux-x86_64 | 0.6.1 | 11.63 | 121.79 | 133.42 | OK | |
| r-release-linux-x86_64 | 0.6.1 | 12.17 | 120.29 | 132.46 | OK | |
| r-release-macos-arm64 | 0.6.1 | OK | ||||
| r-release-macos-x86_64 | 0.6.1 | 9.00 | 403.00 | 412.00 | OK | |
| r-release-windows-x86_64 | 0.6.1 | 14.00 | 181.00 | 195.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.6.1 | 9.00 | 315.00 | 324.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.1 | 20.00 | 214.00 | 234.00 | OK |
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.2"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
Saving _problems/test-taxonRectification-49.R
Saving _problems/test-taxonRectification-50.R
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• !requireNamespace("taxize", quietly = TRUE) is TRUE (1):
'test-taxonRectification.R:13:3'
• !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',
'test-sumFig.R:52:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──
Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-taxonRectification.R:50:3'): taxonRectification performs as expected ──
Expected `testResult$`Searched Taxonomic Databases w/ Matches` == "NCBI"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 4 | SKIP 19 | PASS 158 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang