Last updated on 2026-09-09 06:51:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.8 | 73.94 | 353.38 | 427.32 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.11.8 | 67.20 | 232.31 | 299.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.11.8 | 47.00 | 234.91 | 281.91 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.8 | 67.00 | 226.38 | 293.38 | OK | |
| r-devel-windows-x86_64 | 0.11.8 | 167.00 | 454.00 | 621.00 | OK | |
| r-patched-linux-x86_64 | 0.11.8 | 94.74 | 337.52 | 432.26 | OK | |
| r-release-linux-x86_64 | 0.11.8 | 96.24 | 336.12 | 432.36 | OK | |
| r-release-macos-arm64 | 0.11.8 | 19.00 | 86.00 | 105.00 | OK | |
| r-release-macos-x86_64 | 0.11.8 | 63.00 | 344.00 | 407.00 | OK | |
| r-release-windows-x86_64 | 0.11.8 | 170.00 | 389.00 | 559.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.8 | 17.00 | 89.00 | 106.00 | OK | |
| r-oldrel-macos-x86_64 | 0.11.8 | 61.00 | 498.00 | 559.00 | OK | |
| r-oldrel-windows-x86_64 | 0.11.8 | 208.00 | 513.00 | 721.00 | OK |
Version: 0.11.8
Check: examples
Result: ERROR
Running examples in ‘vectra-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: contours
> ### Title: Extract contour iso-lines from a streamed raster
> ### Aliases: contours
>
> ### ** Examples
>
> ## Don't show:
> if (requireNamespace("sf", quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ z <- outer(1:20, 1:20, function(r, c) r + c)
+ f <- tempfile(fileext = ".vec")
+ vec_write_raster(z, f, dtype = "f64", extent = c(0, 0, 20, 20))
+
+ iso <- contours(f, levels = c(15, 25, 35))
+ collect_sf(iso)
+ unlink(f)
+ ## Don't show:
+ }) # examplesIf
> z <- outer(1:20, 1:20, function(r, c) r + c)
> f <- tempfile(fileext = ".vec")
> vec_write_raster(z, f, dtype = "f64", extent = c(0, 0, 20, 20))
> iso <- contours(f, levels = c(15, 25, 35))
Error in st_line_merge.sfc(sf::st_union(geo[ix])) :
inherits(x, "sfc_MULTILINESTRING") is not TRUE
Calls: withAutoprint ... FUN -> <Anonymous> -> st_line_merge.sfc -> stopifnot
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.11.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [195s/256s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(vectra)
Attaching package: 'vectra'
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
grid
>
> test_check("vectra")
Saving _problems/test-contours-21.R
Saving _problems/test-contours-43.R
Saving _problems/test-contours-56.R
Saving _problems/test-contours-71.R
vectra query node
Columns (3):
mpg <double>
wt <double>
hp <double>
<offload grade: replay cache>
passes over data : 1 to spill, then O(1) re-reads
peak memory : O(one batch)
I/O cost : O(n) to write, O(n) per replay
note : temp spill, removed when the node is garbage-collected
OMP: Warning #96: Cannot form a team with 5 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Spherical geometry (s2) switched off
Spherical geometry (s2) switched on
Spherical geometry (s2) switched off
Spherical geometry (s2) switched on
Saving _problems/test-spatial-topology-67.R
[ FAIL 5 | WARN 9 | SKIP 0 | PASS 3594 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-contours.R:21:3'): contour vertices sample back to their level ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(contours(f, levels = levs)) at test-contours.R:21:3
2. └─vectra::contours(f, levels = levs)
3. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
4. └─vectra (local) FUN(X[[i]], ...)
5. ├─sf::st_line_merge(sf::st_union(geo[ix]))
6. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-contours.R:43:3'): contour total length is invariant to tile size ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─sf::st_length(collect_sf(contours(f1, levs))) at test-contours.R:43:3
2. │ └─sf::st_geometry(x)
3. ├─vectra::collect_sf(contours(f1, levs))
4. └─vectra::contours(f1, levs)
5. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
6. └─vectra (local) FUN(X[[i]], ...)
7. ├─sf::st_line_merge(sf::st_union(geo[ix]))
8. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
9. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-contours.R:56:3'): a planar field gives one line per level of the expected length ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(contours(f, levels = 20)) at test-contours.R:56:3
2. └─vectra::contours(f, levels = 20)
3. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
4. └─vectra (local) FUN(X[[i]], ...)
5. ├─sf::st_line_merge(sf::st_union(geo[ix]))
6. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-contours.R:71:3'): merge = FALSE returns the raw per-cell segments ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(contours(f, levels = 10, merge = TRUE)) at test-contours.R:71:3
2. └─vectra::contours(f, levels = 10, merge = TRUE)
3. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
4. └─vectra (local) FUN(X[[i]], ...)
5. ├─sf::st_line_merge(sf::st_union(geo[ix]))
6. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-spatial-topology.R:67:3'): line_merge sews end-to-end segments into one maximal line ──
Error in `st_line_merge.sfc(sf::st_union(sf::st_geometry(sb)))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(spatial_line_merge(tbl(f))) at test-spatial-topology.R:67:3
2. └─vectra::spatial_line_merge(tbl(f))
3. └─vectra:::.partition_each(...)
4. └─vectra (local) group_fn(df)
5. ├─sf::st_line_merge(sf::st_union(sf::st_geometry(sb)))
6. └─sf:::st_line_merge.sfc(sf::st_union(sf::st_geometry(sb)))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
[ FAIL 5 | WARN 9 | SKIP 0 | PASS 3594 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.11.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘coverage-topology.Rmd’ using rmarkdown
Quitting from coverage-topology.Rmd:65-75 [line-merge]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `st_line_merge.sfc()`:
! inherits(x, "sfc_MULTILINESTRING") is not TRUE
---
Backtrace:
▆
1. ├─vectra::collect_sf(spatial_line_merge(tbl(g)))
2. └─vectra::spatial_line_merge(tbl(g))
3. └─vectra:::.partition_each(...)
4. └─vectra (local) group_fn(df)
5. ├─sf::st_line_merge(sf::st_union(sf::st_geometry(sb)))
6. └─sf:::st_line_merge.sfc(sf::st_union(sf::st_geometry(sb)))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'coverage-topology.Rmd' failed with diagnostics:
inherits(x, "sfc_MULTILINESTRING") is not TRUE
--- failed re-building ‘coverage-topology.Rmd’
--- re-building ‘engine.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘engine.Rmd’
--- re-building ‘formats.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘formats.Rmd’
--- re-building ‘geometry-expressions.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘geometry-expressions.Rmd’
--- re-building ‘indexing.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘indexing.Rmd’
--- re-building ‘joins.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘joins.Rmd’
--- re-building ‘large-data.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘large-data.Rmd’
--- re-building ‘networks.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘networks.Rmd’
--- re-building ‘offload.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘offload.Rmd’
--- re-building ‘quickstart.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘quickstart.Rmd’
--- re-building ‘schema.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘schema.Rmd’
--- re-building ‘sdm.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘sdm.Rmd’
--- re-building ‘spatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘spatial.Rmd’
--- re-building ‘streaming-spatial.Rmd’ using rmarkdown
OMP: Warning #96: Cannot form a team with 8 threads, using 3 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘streaming-spatial.Rmd’
--- re-building ‘string-ops.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘string-ops.Rmd’
SUMMARY: processing the following file failed:
‘coverage-topology.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.11.8
Check: tests
Result: ERROR
Running ‘testthat.R’ [121s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(vectra)
Attaching package: 'vectra'
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
grid
>
> test_check("vectra")
Saving _problems/test-contours-21.R
Saving _problems/test-contours-43.R
Saving _problems/test-contours-56.R
Saving _problems/test-contours-71.R
vectra query node
Columns (3):
mpg <double>
wt <double>
hp <double>
<offload grade: replay cache>
passes over data : 1 to spill, then O(1) re-reads
peak memory : O(one batch)
I/O cost : O(n) to write, O(n) per replay
note : temp spill, removed when the node is garbage-collected
Spherical geometry (s2) switched off
Spherical geometry (s2) switched on
Spherical geometry (s2) switched off
Spherical geometry (s2) switched on
Saving _problems/test-spatial-topology-67.R
[ FAIL 5 | WARN 9 | SKIP 0 | PASS 3594 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-contours.R:21:3'): contour vertices sample back to their level ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(contours(f, levels = levs)) at test-contours.R:21:3
2. └─vectra::contours(f, levels = levs)
3. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
4. └─vectra (local) FUN(X[[i]], ...)
5. ├─sf::st_line_merge(sf::st_union(geo[ix]))
6. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-contours.R:43:3'): contour total length is invariant to tile size ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─sf::st_length(collect_sf(contours(f1, levs))) at test-contours.R:43:3
2. │ └─sf::st_geometry(x)
3. ├─vectra::collect_sf(contours(f1, levs))
4. └─vectra::contours(f1, levs)
5. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
6. └─vectra (local) FUN(X[[i]], ...)
7. ├─sf::st_line_merge(sf::st_union(geo[ix]))
8. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
9. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-contours.R:56:3'): a planar field gives one line per level of the expected length ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(contours(f, levels = 20)) at test-contours.R:56:3
2. └─vectra::contours(f, levels = 20)
3. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
4. └─vectra (local) FUN(X[[i]], ...)
5. ├─sf::st_line_merge(sf::st_union(geo[ix]))
6. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-contours.R:71:3'): merge = FALSE returns the raw per-cell segments ──
Error in `st_line_merge.sfc(sf::st_union(geo[ix]))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(contours(f, levels = 10, merge = TRUE)) at test-contours.R:71:3
2. └─vectra::contours(f, levels = 10, merge = TRUE)
3. └─base::lapply(parts, function(ix) sf::st_line_merge(sf::st_union(geo[ix])))
4. └─vectra (local) FUN(X[[i]], ...)
5. ├─sf::st_line_merge(sf::st_union(geo[ix]))
6. └─sf:::st_line_merge.sfc(sf::st_union(geo[ix]))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
── Error ('test-spatial-topology.R:67:3'): line_merge sews end-to-end segments into one maximal line ──
Error in `st_line_merge.sfc(sf::st_union(sf::st_geometry(sb)))`: inherits(x, "sfc_MULTILINESTRING") is not TRUE
Backtrace:
▆
1. ├─vectra::collect_sf(spatial_line_merge(tbl(f))) at test-spatial-topology.R:67:3
2. └─vectra::spatial_line_merge(tbl(f))
3. └─vectra:::.partition_each(...)
4. └─vectra (local) group_fn(df)
5. ├─sf::st_line_merge(sf::st_union(sf::st_geometry(sb)))
6. └─sf:::st_line_merge.sfc(sf::st_union(sf::st_geometry(sb)))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
[ FAIL 5 | WARN 9 | SKIP 0 | PASS 3594 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘coverage-topology.Rmd’ using rmarkdown
Quitting from coverage-topology.Rmd:65-75 [line-merge]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `st_line_merge.sfc()`:
! inherits(x, "sfc_MULTILINESTRING") is not TRUE
---
Backtrace:
▆
1. ├─vectra::collect_sf(spatial_line_merge(tbl(g)))
2. └─vectra::spatial_line_merge(tbl(g))
3. └─vectra:::.partition_each(...)
4. └─vectra (local) group_fn(df)
5. ├─sf::st_line_merge(sf::st_union(sf::st_geometry(sb)))
6. └─sf:::st_line_merge.sfc(sf::st_union(sf::st_geometry(sb)))
7. └─base::stopifnot(inherits(x, "sfc_MULTILINESTRING"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'coverage-topology.Rmd' failed with diagnostics:
inherits(x, "sfc_MULTILINESTRING") is not TRUE
--- failed re-building ‘coverage-topology.Rmd’
--- re-building ‘engine.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘engine.Rmd’
--- re-building ‘formats.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘formats.Rmd’
--- re-building ‘geometry-expressions.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘geometry-expressions.Rmd’
--- re-building ‘indexing.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘indexing.Rmd’
--- re-building ‘joins.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘joins.Rmd’
--- re-building ‘large-data.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘large-data.Rmd’
--- re-building ‘networks.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘networks.Rmd’
--- re-building ‘offload.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘offload.Rmd’
--- re-building ‘quickstart.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘quickstart.Rmd’
--- re-building ‘schema.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘schema.Rmd’
--- re-building ‘sdm.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘sdm.Rmd’
--- re-building ‘spatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘spatial.Rmd’
--- re-building ‘streaming-spatial.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘streaming-spatial.Rmd’
--- re-building ‘string-ops.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘string-ops.Rmd’
SUMMARY: processing the following file failed:
‘coverage-topology.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc