Depends: R (>= 3.1.0)
Imports: methods, stats, Matrix, Rcpp (>= 1.1.0), RcppParallel (>=
5.1.10), mvtnorm, matrixStats, mashr (>= 0.2.73), ebnm,
flashier (>= 1.0.7), parallel
LinkingTo: Rcpp, RcppArmadillo (>= 0.10.4.0.0), RcppParallel
Suggests: testthat, varbvs, knitr, rmarkdown,

Imports: ggplot2, methods, mvtnorm, progress, tibble, trust

Imports: DescTools, stats, survival (>= 3.8-1)

Imports: Rcpp (>= 0.12.14),methods,foreach,ncvreg,coin(>=
1.1-0),sampling,data.table,doParallel,sbl,BEDMatrix

Depends: R (>= 3.5), survival, igraph, methods

Imports: curl, R6, stringr, stringi, magrittr, assertthat, base64enc,
utils, rvest, xml2

LinkingTo: Rcpp, RcppArmadillo, RcppDist, GIGrvg

Imports: reformulas, dplyr (>= 1.1.0), tidyr (>= 1.3.0), rlang (>=
1.1.0), tidyselect, gee, lme4 (>= 1.1-30), ggplot2 (>= 3.4.0),
stats, utils

Depends: R (>= 4.2)
Imports: rootSolve, stats, geepack, sandwich, mgcv, randomForest,
ranger, boot
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), SuperLearner, earth,
dplyr

Depends: R (>= 3.0.1), methods
Imports: knitr, rmarkdown, plotly (>= 3.6.0), ggplot2 (>= 1.0.1),
robustbase (>= 0.92-6), quantreg (>= 5.01), glmnet

Imports: Matrix, foreach, glmnet, mvtnorm, ncvreg (>= 3.8-0), survival

Suggests: Biostrings, knitr, rmarkdown, testthat (>= 3.0.0)

Imports: Rcpp, fastkmedoids, RcppParallel (>= 5.1.10), data.table,
dplyr, Matrix, rlang
Suggests: knitr, rmarkdown, cluster, fastcluster

Suggests: survRM2, testthat (>= 3.0.0), TSHRC

Imports: Rcpp (>= 1.0.3), RcppParallel (>= 5.0.0)

Imports: stats, data.table, officer (>= 0.3.6), cellranger, writexl,
grDevices, xml2 (>= 1.1.0), htmltools, utils, scales

Depends: R (>= 4.0), cp4p, caret, statmod, MALDIquant, MALDIrppa
Imports: reshape2, ggplot2, dplyr, stats, limma, car, Rcpp, Matrix,
methods
LinkingTo: Rcpp
Suggests: doParallel, foreach, ranger, randomForest, mixOmics, VSURF,
vita, Boruta, glmnet, e1071, xgboost, nnet, mclust, mltools,
metap, MALDIquantForeign, matrixStats, rmarkdown

Depends: R (>= 3.5)
Imports: gtools, Matrix, mclust, mnormt, mvtnorm, psych, cluster,
ggplot2, GGally