Performs Monte Carlo hypothesis tests, allowing a couple of different sequential stopping boundaries. For example, a truncated sequential probability ratio test boundary (Fay, Kim and Hachey, 2007 <DOI:10.1198/106186007X257025>) and a boundary proposed by Besag and Clifford, 1991 <DOI:10.1093/biomet/78.2.301>. Gives valid p-values and confidence intervals on p-values.

Market area models are used to analyze and predict store choices and market areas concerning retail and service locations. This package implements two market area models (Huff Model, Multiplicative Competitive Interaction Model) into R, while the emphases lie on 1.) fitting these models based on empirical data via OLS regression and nonlinear techniques and 2.) data preparation and processing (esp. interaction matrices and data preparation for the MCI Model).

Apply the marginal classification method to achieve the purpose of providing 
    the point and interval estimates for the minimal clinically important difference 
    based on the classical anchor-based method. For more details of the methodology, please 
    see Zehua Zhou, Leslie J. Bisson and Jiwei Zhao (2021) <arXiv:2108.11589>.

Contains the Markov cluster algorithm (MCL) for identifying clusters in networks and graphs. The algorithm simulates random walks on a (n x n) matrix as the adjacency matrix of a graph. It alternates an expansion step and an inflation step until an equilibrium state is reached.

Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts
    using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies.
    Supports both completeness (presence/absence) and abundance-weighted analyses.
    Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.

Read, inspect and process corpus files for quantitative corpus linguistics.
  Obtain concordances via regular expressions, tokenize texts,
  and compute frequencies and association measures. Useful for collocation analysis,
  keywords analysis and variationist studies (comparison of linguistic variants
  and of linguistic varieties).