A template model module, tools to help find model modules
    derived from this template and a programming syntax to use these
    modules in health economic analyses.  These elements are the
    foundation for a prototype software framework for developing living
    and transferable models and using those models in reproducible health
    economic analyses. The software framework is extended by other R
    libraries.  For detailed documentation about the framework and how to
    use it visit <https://www.ready4-dev.com/>. For a background to the
    methodological issues that the framework is attempting to help solve,
    see Hamilton et al. (2024) <doi:10.1007/s40273-024-01378-8>.

Provides a flexible and streamlined pipeline for formatting, analyzing, and 
    visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics, 
    metabolomics). The package includes tools for shaping input data into analysis-ready 
    structures, fitting linear or mixed-effect models, extracting key contrasts, and 
    generating a rich variety of ready-to-use publication-quality plots. 
    Designed for transparency and reproducibility across a wide range of study designs, 
    with customizable components for statistical modeling.

Provides tools for simulating synthetic survival data using a variety of
    methods, including kernel density estimation, parametric distribution fitting,
    and bootstrap resampling techniques for a desired sample size.

A framework for unit testing for realistic minimalists,
    where we distinguish between expected, acceptable, current, fallback,
    ideal, or regressive behaviour. It can also be used for monitoring
    third-party software projects for changes.

Flux (mass per unit time) and Load (mass) are computed from timeseries estimates of analyte concentration and discharge. Concentration timeseries are computed from regression between surrogate and user-provided analyte. Uncertainty in calculations is estimated using bootstrap resampling. Code for the processing of acoustic backscatter from horizontally profiling acoustic Doppler current profilers is provided. All methods detailed in Livsey et al (2020) <doi:10.1007/s12237-020-00734-z>, Livsey et al (2023) <doi:10.1029/2022WR033982>, and references therein.