Imports: dplyr (>= 0.5.0), jsonlite, httr, magrittr, purrr, tibble

Suggests: dplyr, knitr, rmarkdown, testthat

Depends: R (>= 2.14.0), methods, utils, grDevices, MASS, GENEAread,
changepoint, signal, rpart
Suggests: waveslim, knitr, rmarkdown

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), GENEAread (>= 2.0.10),
GENEAclassify

Depends: R (>= 2.7.0), MASS, longitudinal (>= 1.1.3), fdrtool (>=
1.2.5)

Imports: xml2, Biobase, annotate, GEOquery, utils

Depends: R (>= 3.6)
Imports: clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2,
ggraph, ggvenn, igraph, magrittr, openxlsx, stringr, stringi,
tidyr, rlang
Suggests: AnnotationDbi, cowplot, ComplexUpset, forcats, fgsea,
futile.logger, ggplotify, ggsci, ggrepel, ggridges, ggnewscale,
GOplot, GOSemSim, labeling, pheatmap, tm, treemap,
RColorBrewer, RCurl, reshape2, rio, rrvgo, testthat (>= 3.0.0),
wordcloud, knitr, rmarkdown, XML, xml2, httr

Depends: R (>= 4.3.0)
Imports: RcppML, Matrix, stats, methods, utils, Seurat (>= 4.3.0),
cluster, lsa, irlba, pheatmap, dendextend, viridis, colorspace
Suggests: knitr, rmarkdown, fgsea, msigdbr

Imports: readr, stringr, utils, httr, rvest, xml2, writexl, vcfR,
ggplot2, ggrepel

Imports: CVST, graphics, kernlab, mgcv, stats, xgboost

Suggests: VarianceGamma, actuar, SkewHyperbolic, RUnit

Depends: R (>= 3.0)
Imports: Rcpp (>= 1.0.8), RcppParallel (>= 5.1.4), ggplot2
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Suggests: DataVisualizations, rgl, grid, mgcv, png, reshape2, fields,
ABCanalysis, plotly, deldir, methods, knitr (>= 1.12),
rmarkdown (>= 0.9)

Depends: R (>= 3.0)
Imports: Rcpp (>= 1.0.8), RcppParallel (>= 5.1.4), ggplot2,
GeneralizedUmatrix
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Suggests: DataVisualizations, rgl, grid, mgcv, png, reshape2, fields,
ABCanalysis, plotly, deldir, methods, knitr (>= 1.12),
rmarkdown (>= 0.9), ProjectionBasedClustering

Depends: R (>= 3.1)
Imports: methods, stats, utils, Matrix, Rcpp, spam, spam64, parallel,
optimParallel, fields
LinkingTo: Rcpp, RcppEigen, BH, Matrix
Suggests: knitr, R.rsp, testthat (>= 3.0.0), mvtnorm, ggplot2,
gridExtra, dplyr, microbenchmark