Depends: R (>= 3.2)
Imports: dplR, dplyr, forcats, ggplot2, ggpubr, magrittr, purrr, rlang,
stats, tidyr, glue, tibble
Suggests: testthat, vdiffr, knitr, rmarkdown

Imports: utils, stats, formula.tools(>= 1.7.1)

Imports: Rcpp (>= 0.11.1), lattice, robustbase
LinkingTo: Rcpp

Imports: sgs, caret, MASS, methods, stats, grDevices, graphics, Matrix
Suggests: SGL, gglasso, glmnet, testthat

Depends: R (>= 3.3.1), Biobase, MLInterfaces
Imports: genefilter, ALL, grDevices, graphics, stats, utils

Depends: R (>= 3.5.0)
Imports: assertthat, magrittr, stringr, utils
Suggests: biomaRt, conflicted, dplyr, edgeR, GenomicRanges, glue,
knitr, rmarkdown, testthat

Depends: R (>= 3.5.0)
Imports: assertthat, DGEobj (>= 1.0.3), dplyr, methods, stats, stringr
Suggests: biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW,
limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva,
testthat, zFPKM

Suggests: ggplot2, knitr, rmarkdown, dplyr, maps, R.rsp, testthat

Imports: nloptr (>= 1.2.1), COMPoissonReg

Depends: R (>= 2.10)
Imports: GPFDA, Rcpp, factor.switching, mvtnorm, combinat, coda,
corrplot, pheatmap, stats
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 4.0)
Imports: reticulate (>= 1.26), benchmarkme (>= 1.0.8), utils, ggplot2,
ggforce, reshape2, patchwork, lhs, methods, stats, clhs, dplyr,
uuid, tidyr, rlang, lifecycle, magrittr, visNetwork, parallel,
kableExtra
Suggests: knitr, rmarkdown, MASS, R.utils, spelling

Depends: R (>= 3.0.2)
Imports: stats, graphics, utils, grDevices, Matrix, parallel, gap,
lmtest, ape, qgam (>= 1.3.2), lme4
Suggests: knitr, testthat (>= 3.0.0), rmarkdown, KernSmooth, sfsmisc,
MASS, mgcv, mgcViz (>= 0.1.9), spaMM (>= 3.2.0), GLMMadaptive,
glmmTMB (>= 1.1.2.3), phylolm (>= 2.6.5)
Enhances: phyr, rstan, rjags, BayesianTools

Depends: R (>= 3.4.0), methods, Matrix, boot, MASS, car, sandwich

Imports: reshape, survey, stats, haven, matrixStats, dplyr, rlang,
crayon

Imports: dplyr, ggplot2, rlang, sf, spdep, viridis, nlme, MuMIn, tidyr,
stats
Suggests: knitr, spData, rmarkdown, testthat (>= 3.0.0)