Depends: R (>= 3.5.0)
Imports: plyr, dplyr, jsonlite, magrittr, r2d3, ggplot2, stringr,
tibble
Suggests: knitr, htmltools, readxl, testthat, rmarkdown, widgetframe

Imports: Rcpp (>= 1.0.7), matrixStats, ggplot2, dplyr, stats, utils

Depends: R (>= 3.1.1)
Imports: rgl, tkrplot, tcltk, tcltk2, shapes, plotrix, MASS

Depends: R(>= 3.1), adlift, nlt, CNLTreg, fields

Suggests: foreign, knitr, markdown, readxl, rmarkdown, shiny,
shinycssloaders, testthat (>= 3.0.0)

Depends: R (>= 2.10), parallel, mclust, rlecuyer, stats

Imports: methods, doParallel, foreach, flexmix, limSolve, ggplot2,
snow, cowplot, pheatmap, RColorBrewer, viridisLite, colorspace,
stats, utils

Depends: R (>= 4.1.0)
Imports: stats, Matrix, doParallel, dplyr, foreach, glmnet, tidyr
Suggests: rmarkdown, knitr, rlang, tidyverse, markdown, kableExtra,
patchwork, ggplot2, withr

Imports: methods, Rcpp (>= 0.12.0), rstan (>= 2.18.1), vegan,
rstantools (>= 2.1.1), tibble

Depends: R (>= 4.1.0),ggplot2
Imports: tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
plyr,data.table,dplyr, doParallel,stringr,rtracklayer,Hmisc
Suggests: knitr, remotes,pwr,ComplexHeatmap,rmarkdown,
HiCseg,igraph,visNetwork,circlize,plotly,
InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
shinythemes,shinycssloaders,DT,logging,heatmaply,
S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie

Depends: R (>= 3.1.0)
Imports: assertthat (>= 0.1), digest, methods, parallel, R6 (>= 2.0.1),
Rcpp (>= 0.11.0), rehh (>= 3.0.0), scrm (>= 1.6.0-2), stats,
utils
LinkingTo: Rcpp, RcppArmadillo (>= 0.3.810.0)
Suggests: abc (>= 2.0), knitr, PopGenome (>= 2.1.0), phyclust (>=
0.1-16), rmarkdown, testthat (>= 0.11.0)

Imports: Matrix, phangorn, splines, stats, utils

Imports: MCMCpack, graphics, stats, methods

Imports: sf, tidyr, utils, fields, readxl, writexl, ggplot2, progress,
sfheaders

Suggests: MatchIt (>= 4.0.0), WeightIt (>= 1.0.0), twang (>= 1.6),
twangContinuous, Matching, optmatch, ebal, CBPS (>= 0.17),
optweight, mice (>= 3.8.0), MatchThem (>= 0.9.3), cem (>=
1.1.30), sbw (>= 1.1.5), gbm (>= 2.1.7), brglm2 (>= 0.9),
caret, knitr, rmarkdown, testthat (>= 3.0.0)