Depends: R (>= 4.1.0)
Imports: withr, parallel, pbapply, mirai, purrr, DEoptim, dfoptim,
Rcpp, Rdpack, progress, stats, lifecycle, coda
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0), cowsay, knitr, rmarkdown, DMCfun,
truncnorm, vdiffr

Imports: DALEX, dplyr, tidyr, ingredients

Imports: seqinr, ggplot2, parallel, future, doParallel, foreach,
tidyverse, dplyr, reshape2, Rdpack

Suggests: knitr, rmarkdown, devtools, roxygen2, irlba

Depends: R (>= 4.0)
Imports: caret, randomForest, GenomicRanges, GenomeInfoDb,
GenomicFeatures, S4Vectors, rlang,
Suggests: org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, testthat, covr, knitr,
rmarkdown

Suggests: covr, ggplot2, mockery, testthat (>= 3.0.0), tibble, vdiffr

Depends: R (>= 3.5.0), limma, utils, grDevices, DESeq2,
SummarizedExperiment
Imports: stats, graphics, ggplot2, ggfortify, rlang
Suggests: parallel, shiny, shinyBS, shinycssloaders, shinyjs,
shinyWidgets, sortable, testthat, knitr, rmarkdown, sva,
VennDiagram, plotly, svglite

Depends: R (>= 3.5),
Suggests: knitr, rmarkdown, testthat (>= 3.0.0),

Depends: R (>= 3.0.0)
Imports: shiny, ggplot2, data.table, survival, lifecycle
Suggests: DT, shinydashboard, knitr, rmarkdown, kableExtra

Suggests: testthat, knitr, rmarkdown, ggsci

Imports: gam, janitor, reshape2, stringr, tidyr, dplyr, SuperLearner,
ggplot2, nnet, nnls, parallel, ranger

Imports: Rcpp, BiasedUrn, rootSolve, future, future.apply, Rdpack (>=
2.6)

Imports: DatabionicSwarm
Suggests: plotly, geometry, deldir, FCPS, ProjectionBasedClustering (>=
1.2.1), DataVisualizations, FastKNN, ggplot2, pcaPP,pracma,
spdep, grid, igraph, cccd, sf

Depends: parallel, spatstat.geom, R (>= 4.0.0)
Imports: CompQuadForm, irlba, cowplot, ggplot2, MASS, Matrix, mclust,
methods, purrr, S4Vectors, RColorBrewer, Rcpp (>= 1.0.5),
Seurat, stats
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown

Imports: Rcpp, frailtyEM, survival, ggplot2, pracma, abind

Suggests: testthat, knitr, rmarkdown, gam, quadprog, nloptr, parallel,
foreach, stringi