Imports: Biostrings (>= 2.48.0), dplyr, GenomicAlignments (>= 1.18.1),
GenomicRanges, IRanges, logger, read.gb (>= 2.2), RCircos (>=
1.2.0), grDevices, stats, utils, tidyr, R6

Depends: R (>= 3.0.0)
Imports: Rcpp, dplyr (>= 1.0.0), lubridate, rlang
LinkingTo: Rcpp
Suggests: ggplot2, testthat, knitr, rmarkdown, lazyeval, tidyr,
data.table

Imports: Rcpp (>= 0.11.3) , grDevices, graphics, stats, RColorBrewer,
VGAM, MASS, magicaxis, networkDynamic, network, plyr, igraph,
mapproj, knitr, methods, ggplot2

Imports: glasso, lars, network, GGally, caret, randomForest, metrica,
MASS, stats, RSQLite
Suggests: sna

Depends: R (>= 3.5.0)
Imports: rmarkdown (>= 2.13), bookdown (>= 0.8), htmltools, jsonlite,
later (>= 1.0.0), processx, servr (>= 0.31), httpuv, xfun,
websocket
Suggests: promises, testit, xaringan, pdftools, revealjs, covr, xml2

Suggests: knitr, shiny, rmarkdown, devtools

Imports: grid
Suggests: ggplot2, knitr, lattice, rmarkdown, testthat

Imports: Rcpp, lifecycle, ggplot2, RcppParallel

Depends: R (>= 3.5.0), Matrix, igraph
Imports: dendsort, drat, fastcluster, graphics, grDevices, irlba,
magrittr, MASS, mgcv, methods, N2R, parallel, plyr, R.utils,
Rcpp, rjson, rlang, R6, RMTstat, Rook, Rtsne, sccore (>=
0.1.1), stats, urltools, utils
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen
Suggests: AnnotationDbi, base64enc, BiocGenerics, BiocParallel,
colorRamps, data.table, dbscan, dplyr, ggplot2, GO.db,
gridExtra, KernSmooth, knitr, org.Dr.eg.db, org.Hs.eg.db,
org.Mm.eg.db, pcaMethods, pheatmap, rgl, rmarkdown, robustbase,
scde, testthat, uwot

Suggests: knitr, patchwork, spelling, rmarkdown

Depends: TSP,gtools, graph, methods
Suggests: knitr, rmarkdown, Sleuth3, colorspace,multcomp,igraph,
scales,RColorBrewer,alr4,scagnostics

Imports: graphics, stats, boot, MASS, mcprofile

Depends: R (>= 4.1)
Imports: curl, dplyr, httr2, jsonlite, rlang, stats, tibble,
tidyselect, tools, utils
Suggests: BradleyTerry2, EloChoice, knitr, mockery, purrr, readr,
rmarkdown, sirt, stringr, testthat (>= 3.0.0), tidyr, withr