Imports: aricode, future, future.apply, ggplot2, magrittr, pcaPP,
rlang, Rtsne, Seurat, stats, uwot, vegan
Suggests: spelling, knitr, rmarkdown, scRNAseq, SummarizedExperiment,
BiocManager, testthat (>= 3.0.0)

Imports: pbapply, RSpectra, Matrix, methods, stats, utils, MASS,
scTenifoldNet
Suggests: testthat (>= 2.1.0)

Imports: pbapply, RSpectra, Matrix, methods, stats, utils, MASS,
RhpcBLASctl
Suggests: testthat (>= 2.1.0)

Depends: R (>= 3.5), future (>= 1.6.2)
Imports: ggplot2, Synth, stringr, stats, cvTools, furrr, dplyr, purrr,
tidyr, magrittr
Suggests: testthat (>= 3.0.0), knitr, rmarkdown

Imports: dplyr, magrittr, MASS, Matrix (>= 1.5-0), methods,
future.apply, future, ggplot2, reshape2, rlang, gridExtra,
matrixStats
LinkingTo: RcppArmadillo, Rcpp (>= 0.11.0)

Imports: ggExtra, ggplot2, graphics, plotly, scales, stats, utils

Imports: glmnet, glasso, huge, POET, stats

Suggests: httr, rjson, grid, knitr, rmarkdown, multigraph

Depends: R (>= 3.5.0)
Imports: methods, stats, dplyr, ggplot2, grid, car

Imports: methods, grid, linbin, grImport2, readxl

Depends: R (>= 4.2.0)
Imports: data.table, deSolve, DiagrammeR, dplyr, igraph, jsonlite,
JuliaConnectoR, magrittr, parallel, plotly, purrr, rlang,
rvest, stringr, xml2
Suggests: DiagrammeRsvg, htmlwidgets, kableExtra, knitr, rsvg, styler,
testthat (>= 3.0.0), textutils, webshot2

Imports: shiny, shinyjs, shinyTree, jsonlite, rlang, data.table, cli,
Rcpp

Depends: R (>= 3.5)
Imports: broom (>= 0.5.5), checkmate (>= 2.0.0), cli, data.table (>=
1.12.8), mathjaxr, stats, utils
Suggests: cffr, knitr, lfe, rmarkdown, skimr, spelling, testthat (>=
3.0.0), tibble

Imports: utils, stats, graphics, car, carData, rmarkdown, knitr,
data.table, xtable, robustbase, cluster, MASS, e1071, tools,
Rcpp, methods, ggplot2, shiny (>= 1.4.0), haven, rhandsontable,
DT, shinyBS, prettydoc, VIM(>= 4.7.0)

Suggests: testthat, knitr, rmarkdown, sp, sf, FNN

Imports: data.table, knitr, rlang, stringr, methods, slam, progress,
utils, Matrix (>= 1.3-0), SSBtools, highs
Suggests: testthat (>= 0.3), rmarkdown, webshot, digest, RegSDC