Suggests: knitr, testthat, pkgdown, rmarkdown, withr

Suggests: network, rmarkdown, knitr, sna, testthat

Suggests: knitr, stringi, testthat, withr, hms, readr

Depends: R (>= 4.1.0)
Imports: arrow, data.table, dplyr, purrr, readxl, rlang, rsample,
rstatix, stats, tibble, utils
Suggests: knitr, rmarkdown, testthat, tidyr, tools

Depends: cmm, Rsolnp, numDeriv, R(>= 2.10.0)

Depends: R (>= 3.5.0), stats, utils, graphics, grDevices,
Imports: ggplot2, stringr, tidyr, shinyWidgets, data.table, readxl,
shiny.i18n (>= 0.2.0), showtextdb, shinyalert, readr, showtext,
shiny (>= 1.5.0), reshape, rlang, dplyr, reshape2
Suggests: testthat, knitr, rmarkdown, tidyverse

Depends: R (>= 3.1.0)
Imports: MASS, CompQuadForm, quantreg, GUniFrac, PearsonDS, lme4,
Matrix, permute, mixtools, survival, stats
Suggests: knitr, vegan, rmarkdown, magrittr, kableExtra

Imports: stats, utils, ggplot2, pROC, qpdf
Suggests: testthat

Imports: Matrix, stats, Rcpp, CORElearn, RSpectra,
LinkingTo: Rcpp

Depends: stats, R (>= 4.1.0), stats4, lattice, methods
Imports: GPArotation, gridExtra, Matrix (>= 1.5-0), Rcpp, mgcv, vegan,
Deriv, splines, pbapply (>= 1.3-0), dcurver, SimDesign
LinkingTo: Rcpp, RcppArmadillo
Suggests: boot, latticeExtra, directlabels, shiny, knitr, markdown,
Rsolnp, nloptr, sirt, plink, mirtCAT, testthat (>= 3.0.0)

Imports: lattice, stats, Rcpp, methods, markdown, pbapply, lpSolve

Imports: Rcpp (>= 0.12.17), stats, GPArotation

Depends: R (>= 3.1)
Imports: GPArotation, mirtjml, graphics, stats

Imports: mvtnorm, stats, MASS, norm, methods, abind, glmnet

Imports: grDevices, graphics, stats, tcltk

Suggests: mixAK (>= 2.6), BRugs (>= 0.8-6)

Imports: stats, Matrix, MASS, ucminf, numDeriv, foreach, mlogit

Depends: R (>= 4.1.0), phyloseq, ggplot2 (>= 3.5.0), dada2, dplyr,
purrr
Imports: ape, lifecycle, rlang, stats
Suggests: adespatial, ANCOMBC, BiocManager, Biostrings, circlize,
ComplexUpset, DECIPHER, DESeq2, devtools, DT, edgeR,
formattable, ggalluvial, ggfittext, gghalves, ggh4x, ggnetwork,
ggstatsplot, ggridges, ggVennDiagram, glmulti, gtsummary,
grDevices, grid, gridExtra, here, httr, igraph, iNEXT,
indicspecies, IRanges, jsonlite, knitr, magrittr, methods, mia,
mixtools, multcompView, networkD3, pak, patchwork, pbapply,
permute, phangorn, phyloseqGraphTest, pkgnet, plotly, plyr,
reshape2, rmarkdown, rotl, Rtsne, scales, seqinr, SRS, stringr,
SummarizedExperiment, testthat (>= 3.0.0), tibble, tidyr,
treemapify, umap, uwot, vegan, venneuler, vctrs, viridis,
withr, spelling