Developed to deal with multi-locus genotype data, this package is especially designed for those panel which include different type of markers. Basic genetic parameters like allele frequency, genotype frequency, heterozygosity and Hardy-Weinberg test of mixed genetic data can be obtained.     In addition, a new test for mutual independence which is compatible for mixed genetic data is developed in this package.

Kernel-based methods are powerful methods for integrating 
    heterogeneous types of data. mixKernel aims at providing methods to combine
    kernel for unsupervised exploratory analysis. Different solutions are 
    provided to compute a meta-kernel, in a consensus way or in a way that 
    best preserves the original topology of the data. mixKernel also integrates
    kernel PCA to visualize similarities between samples in a non linear space
    and from the multiple source point of view 
    <doi:10.1093/bioinformatics/btx682>. A method to select (as well as 
    funtions to display) important variables is also provided 
    <doi:10.1093/nargab/lqac014>.

Specification and estimation of multinomial logit
    models.  Large datasets and complex models are supported, with an
    intuitive syntax.  Multinomial Logit Models, Mixed models, random
    coefficients and Hybrid Choice are all supported.  For more
    information, see Molloy et al. (2021) <https://www.research-collection.ethz.ch/handle/20.500.11850/477416>.

Provides a function for the estimation of mixture of longitudinal factor analysis models using the iterative expectation-maximization algorithm (Ounajim, Slaoui, Louis, Billot, Frasca, Rigoard (2023) <doi:10.1002/sim.9804>) and several tools for visualizing and interpreting the models' parameters.

The main functions perform mixed models analysis by least squares
    or REML by adding the function r() to formulas of lm() and glm(). A collection of
    text-book statistics for higher education is also included, e.g. modifications
    of the functions lm(), glm() and associated summaries from the package 'stats'.