Depends: R (>= 4.4)
Imports: dplyr, forcats, ggplot2, grDevices, patchwork, MASS, Matrix,
matrixStats, metR, nlme, stats, tidyr, refund, reshape, tibble,
rlang, magrittr, utils
Suggests: knitr, mgcv, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.00)
Imports: Rcpp (>= 0.12.0), methods, MASS, knitr
LinkingTo: Rcpp, RcppArmadillo
Suggests: gsl (>= 1.8-3), hypergeo(>= 1.0), rmarkdown, testthat, crch,
ggplot2

Depends: R (>= 4.1)
Imports: checkmate, cli, data.table (>= 1.16.0), ggplot2 (>= 3.4.0),
methods, Metrics, purrr, scoringRules (>= 1.1.3), stats
Suggests: ggdist, kableExtra, knitr, magrittr, rmarkdown, testthat (>=
3.1.9), vdiffr

Imports: Matrix, survival, pracma, foreach, doParallel, parallel, Rcpp

Depends: R (>= 3.5.0)
Imports: cli, methods, irlba, igraph, RANN, Matrix, pbapply, dplyr
Suggests: RhpcBLASctl, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: dplyr, dynutils (>= 1.0.3), dynwrap, grDevices, ggplot2 (>=
2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap,
princurve (>= 2.1.4), purrr, ranger, RANN, RColorBrewer,
reshape2, stats, tidyr, TSP
Suggests: anndata, covr, knitr, reticulate, rmarkdown, Seurat,
SingleCellExperiment, testthat (>= 2.1.0)

Imports: glasso, stats, grDevices, graphics
Suggests: lars

Suggests: testthat (>= 3.0.0), shinytest2, chromote, phosphoricons

Depends: R (>= 3.5.0), ggplot2, ggpubr, stats

Imports: Matrix, missMDA, mvtnorm, ohenery, pracma, quadprog, withr,
purrr

Imports: Seurat, dplyr, rdist, energy, stats

Imports: Seurat, batchelor, dplyr, ReactomeGSA, celldex, SingleR,
SummarizedExperiment, biomaRt, magrittr, rlang
Suggests: knitr, rmarkdown

Depends: R (>= 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools,
nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (>= 3.0.0)

Imports: ggplot2, scan (>= 0.61.0), stats, utils, mblm

Depends: R (>= 4.1.0)
Imports: methods, utils, stats, foreach (>= 1.5.2), doParallel (>=
1.0.17), tictoc (>= 1.2.1), Matrix (>= 1.6-3), glmnet (>=
4.1-8), xgboost (>= 1.7.10), reticulate, stringr, magrittr,
scTenifoldNet, VGAM (>= 1.1-13), Biobase (>= 2.66.0),
BiocGenerics (>= 0.52.0), monocle (>= 2.34.0), cicero (>=
1.24.0)