Depends: R (>= 3.5.0)
Imports: ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings,
grDevices, doParallel, foreach, parallel
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: testthat, knitr, rmarkdown, Rtsne, scatterplot3d

Imports: stats
Suggests: Rfast, Rfast2, knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: cluster, scatterplot3d, MASS, R.rsp

Depends: R (>= 3.0), raster, igraph, oro.dicom, plyr
Suggests: knitr, rmarkdown, testthat, covr

Imports: naturalsort (>= 0.1.2), methods

Depends: R (>= 4.3.0)
Imports: cli, dplyr, glue, hms, lubridate, purrr, rlang, sf, stringr,
tibble, tidyr, uuid
Suggests: gt, knitr, nanoparquet, ozmaps, readr, rmarkdown, testthat
(>= 3.0.0), withr

Depends: R (>= 2.10)
Imports: fastmatch, vegan, SRS, edgeR, ggplot2, ggrepel, stats, plotly,
reshape2

Suggests: car, splines, survival, testthat

Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel,
viridis, Rmpfr, igraph, phytools

Depends: R (>= 3.0.1), ggplot2, gplots, RColorBrewer, igraph, stats,
grDevices
Suggests: datasets

Suggests: knitr, Rdisop, rmarkdown, testthat, vdiffr

Depends: R (>= 3.2)
Imports: stats, utils, VGAM, numDeriv, ggplot2, trust, dplyr, magrittr,
detectseparation, scales, rlang
Suggests: knitr, rmarkdown, testthat, covr, limma, slam, R.rsp, optimx,
phyloseq

Suggests: knitr, testthat, rmarkdown, RColorBrewer, MASS, mvtnorm,
randomForest, xgboost, MLmetrics

Suggests: knitr, later (>= 1.1.0), magrittr (>= 2.0.0), promises,
reticulate, rmarkdown, testthat (>= 3.0.0)

Imports: gganimate, ggplot2, gridExtra, qicharts2, reshape2

Suggests: DT, dplyr, knitr, plotly, readr, rmarkdown, remotes, testthat
(>= 2.1.0)

Imports: methods, stats, utils, grDevices

Depends: R (>= 3.0.0)
Imports: data.table, dplyr, ggplot2, lubridate, magrittr, padr, plyr,
RColorBrewer, re2, rlang, rmarkdown, scales, shiny,
shinydashboard, shinyjs, shinyWidgets, stringi, stringr,
tibble, tidyr
Suggests: janeaustenr, shinytest2, sotu, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: methods, wordcloud (>= 2.5), stringi, Rcpp (>= 0.12.12), R6,
udpipe (>= 0.8.3), digest, data.table (>= 1.10.4), quanteda (>=
1.5.1), igraph, tokenbrowser (>= 0.1.5), RNewsflow (>= 1.2.1),
Matrix (>= 1.2), parallel, pbapply (>= 1.4), rsyntax (>= 0.1.1)
LinkingTo: Rcpp, RcppProgress
Suggests: testthat, tm (>= 0.6), topicmodels, knitr, rmarkdown