Imports: stats, graphics, grDevices, utils, ggplot2

Depends: R (>= 3.5.0)
Imports: softImpute, RSpectra, doParallel, Matrix, foreach
Suggests: knitr, rmarkdown, igraph, missSBM, RColorBrewer, combinat,
testthat

Imports: gridExtra, ggplot2, stringr, progress, psych, fastDummies,
fclust, MASS, devtools, foreach, doSNOW, nnet

Suggests: testthat, MASS, knitr, rmarkdown, dplyr, gsDesign, mvtnorm

Depends: R (>= 3.5.0)
Imports: dplyr, ggplot2, glue, magrittr, purrr, readr, rlang, stats,
stringr, tibble, tidyr
Suggests: cowplot, knitr, rmarkdown, tidyverse

Depends: R (>= 3.5.0), igraph, Matrix, EbayesThresh, ggplot2

Depends: R (>= 3.5.0)
Imports: dplyr (>= 1.1.0), ggplot2 (>= 3.1.1), graphics, gt, magrittr,
methods, r2rtf, rlang, stats, tibble, tidyr, tools, xtable
Suggests: covr, data.table, gridExtra, kableExtra, knitr, mvtnorm,
rmarkdown, scales, testthat, utils, vdiffr

Depends: R (>= 4.1.0)
Imports: corpcor, data.table, dplyr, gsDesign, gt, methods, mvtnorm,
npsurvSS (>= 1.1.0), r2rtf, stats, survival, tibble, tidyr,
utils, Rcpp
LinkingTo: Rcpp
Suggests: covr, ggplot2, cowplot, kableExtra, knitr, rmarkdown,
simtrial, testthat (>= 3.0.0)

Imports: rrcov, robustbase, cellWise, ggplot2, methods

Imports: Rcpp (>= 0.11.2), ontologyIndex (>= 2.0)

Depends: R (>= 3.5.0)
Imports: aplot, DOSE, dplyr, ggplot2, ggpp, ggrepel, ggsci, grDevices,
magrittr, purrr, RColorBrewer, reshape2, stringr, tibble, utils

Imports: SAM, penalized, gdata, stats, utils

Depends: R (>= 4.4)
Imports: Biobase, limma, Rdpack, GSVA, progress, pbapply, doParallel,
parallel, BiocParallel, metafor, RColorBrewer, pheatmap,
methods, scales, plyr, grDevices, stats, impute
Suggests: BiocStyle, qpdf, BiocGenerics, RUnit, knitr, rmarkdown

Depends: R (>= 4.0)
Imports: ggplot2, ggtext, graphics, grDevices, gridExtra, lifecycle,
osqp, rlang (>= 1.1.0), stats, utils, xmpdf
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: knitr, rmarkdown, testthat, ggplot2, gridExtra,
microbenchmark, covr

Depends: R (>= 3.5.0)
Imports: curl, data.table (>= 1.15.4), lifecycle, R.utils, stats,
utils, withr
Suggests: bit64, dplyr, ggplot2, gridExtra, knitr, mapproj, maps,
rmarkdown, roxyglobals, spelling, testthat, tidyr