Depends: R (>= 4.0.0)
Imports: ComplexHeatmap (>= 2.6.0), GetoptLong, GlobalOptions, utils,
grid, hash, methods, BiocManager, brew, BiocVersion
Suggests: knitr, rmarkdown, svglite, callr, rjson, Rook, igraph,
ggplot2, ggrepel, base64, testthat, cowplot

Imports: assertthat, covr, data.table, DT, futile.logger, glue,
igraph(>= 1.3), knitr, magrittr, methods, R6, rlang,
rmarkdown(>= 1.9), tools, visNetwork
Suggests: ggplot2, pkgdown, testthat, webshot, withr

Imports: utils
Suggests: commonmark, httr, xml2, covr, testthat

Imports: curl, jsonlite
Suggests: covr, memoise, mockery, pillar, pingr (>= 2.0.0), rstudioapi,
shiny, shinyjs, shinyWidgets, testthat (>= 3.0.0), whoami,
withr

Imports: ami, brio, checkmate, dplyr, fs, igraph, memoise, methods,
readr, roxygen2, sys, withr
LinkingTo: cpp11
Suggests: callr, curl, hms, httr2, jsonlite, knitr, parallel,
piggyback, pkgbuild, Rcpp, rmarkdown, testthat (>= 3.0.0),
tibble, visNetwork

Imports: checkmate, dplyr (>= 0.5.0), digest, nlme, purrr, rlang,
stats, tidyr, tibble, utils, lifecycle
Suggests: covr, cowplot, ggplot2, knitr, labeling, pander, pmxTools,
rmarkdown, spelling, testthat (>= 3.0.0), units, withr

Depends: R (>= 4.0.0)
Imports: Rcpp (>= 1.0.13), BH, data.table, stringr, MASS, randtoolbox,
jsonlite, stats, parallel, magrittr
LinkingTo: BH, Rcpp (>= 1.0.13)
Suggests: httr, testthat (>= 3.0.0), mockery, knitr, rmarkdown

Depends: R (>= 2.0.0), foreign, binr, forestplot, rtf

Depends: R (>= 4.1)
Imports: ggplot2, data.table, deSolve, foreach, parallel, doParallel
Suggests: covr, knitr, httk, rmarkdown, testthat

Depends: R (>= 4.0.0)
Imports: cli, stringr, readr, dplyr (>= 1.0.0), tinytiger, sf, withr,
httr
Suggests: testthat (>= 3.0.0), lifecycle, knitr, rmarkdown, ggplot2

Suggests: dplyr, knitr, rmarkdown, kableExtra

Depends: R (>= 2.10)
Imports: CVXR, igraph, Matrix, matrixStats, methods, partykit,
psychotools, psychotree, R6, RSpectra, qvcalc, sandwich, stats
Suggests: BiocStyle, BayesMallows, BradleyTerry2, PLMIX, ROlogit,
StatRank, bookdown, covr, hyper2, kableExtra, knitr, lbfgs,
gnm, pmr, prefmod, rmarkdown, survival, testthat