Depends: R (>= 4.0)
Imports: caret, randomForest, GenomicRanges, GenomeInfoDb,
GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, S4Vectors, org.Hs.eg.db,
rlang,
Suggests: testthat, covr, knitr, rmarkdown

Suggests: covr, ggplot2, mockery, testthat (>= 3.0.0), tibble, vdiffr

Depends: R (>= 3.5.0), limma, utils, grDevices, DESeq2,
SummarizedExperiment
Imports: stats, graphics, ggplot2, ggfortify, rlang
Suggests: parallel, shiny, shinyBS, shinycssloaders, shinyjs,
shinyWidgets, sortable, testthat, knitr, rmarkdown, sva,
VennDiagram, plotly, svglite

Depends: R (>= 3.5),
Suggests: knitr, rmarkdown, testthat (>= 3.0.0),

Depends: R (>= 3.0.0)
Imports: shiny, ggplot2, data.table, survival, lifecycle
Suggests: DT, shinydashboard, knitr, rmarkdown, kableExtra

Suggests: testthat, knitr, rmarkdown, ggsci

Imports: gam, janitor, reshape2, stringr, tidyr, dplyr, SuperLearner,
ggplot2, nnet, nnls, parallel, ranger

Imports: Rcpp, BiasedUrn, rootSolve, future, future.apply, Rdpack (>=
2.6)

Imports: DatabionicSwarm
Suggests: plotly, geometry, deldir, FCPS, ProjectionBasedClustering (>=
1.2.1), DataVisualizations, FastKNN, ggplot2, pcaPP,pracma,
spdep, grid, igraph, cccd, sf

Suggests: testthat, knitr, rmarkdown, gam, quadprog, nloptr, parallel,
foreach, stringi

Depends: R (>= 3.5.0), doParallel, parallel, foreach, iterators
Imports: mvtnorm, cubature, msm, MASS, stats, progressr
Suggests: rmarkdown, knitr, testthat (>= 3.0.0), covr, kableExtra,
magrittr, devtools

Suggests: testthat (>= 3.0.0), duckdb, odbc, DBI, knitr, rmarkdown,
zip, lubridate, tibble, DT, graphics, SqlRender, ggplot2,
plotly, pryr, tictoc, here, shiny (>= 1.6.0), shinycssloaders,
shinyWidgets, shinyjs, shinytest2

Depends: R (>= 4.2)
Imports: dplyr, ggplot2, ggpubr, knitr, roxygen2, stats, stringr,
tidyr, tidyselect, utils, testthat (>= 3.0.0)

Imports: igraph, stats, pheatmap, tidyr, reshape2, fastmatch

Depends: R (>= 4.1)
Imports: cli, clock, CodelistGenerator (>= 3.1.0), dplyr, glue,
lifecycle, omopgenerics (>= 1.3.1), PatientProfiles (>= 1.4.2),
purrr, rlang, stringr, tidyr
Suggests: bit64, CDMConnector (>= 1.4.0), CohortConstructor,
CohortSurvival, covr, DBI, duckdb, flextable, ggplot2, ggtext,
gt, here, knitr, odbc, omock, rmarkdown, RPostgres, scales,
testthat (>= 3.1.5), tibble, visOmopResults (>= 1.3.0)