Single Cell Transcriptomics-Level Cytokine Activity Prediction
and Estimation
R package scaper version 0.2.0

User-Defined Classification of Raster Surfaces
R package scapesClassification version 1.0.0

Graph Neural Network-Based Framework for Single Cell Active
Pathways and Gene Modules Analysis
R package scapGNN version 0.1.4

Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
R package scar version 0.2-2

Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models

Create Scatter Plots with Marginal Density or Box Plots

Density Estimation and Visualization of 2D Scatter Plots

R package scatterPlotMatrix version 0.3.0

Identifies Mean, Variance, and Hierarchically Clustered
Biclusters

Single Cell Genomics for Enhancing Cell Composition Inference
from Bulk Genomics Data
R package scBio version 0.1.6

Simultaneous Confidence Bands for the Mean of Functional Data

A Fast Tool for Single-Cell Spatially Variable Genes
Identifications on Large-Scale Data
R package scBSP version 1.1.0

Single Cell Cluster-Based Annotation Toolkit for Cellular
Heterogeneity

Single-Cell Correlation Based Cell Type Annotation

Stochastic Complexity-Based Conditional Independence Test for
Discrete Data
R package SCCI version 1.2

The Self-Consistent, Competing Risks (SC-CR) Algorithms

Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing
R package scCustomize version 3.2.4

Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
R package SCDB version 0.6.0

Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq
Data as Reference
R package SCdeconR version 1.0.0

Single-Cell Decomposition using Hierarchical Autoencoder

Estimating Hierarchical Linear Models for Single-Case Designs

Differential Analysis of Intercellular Communication from
scRNA-Seq Data

Applying Partitioning Around Medoids to Single Cell Data with
High Number of Cells
R package scellpam version 1.4.6.2

Post-Processing Algorithm for Integrating Wildfire Simulations

Single Cell Entropy Analysis of Gene Heterogeneity in Cell
Populations
R package SCEnt version 0.0.1