An R autograding extension for Otter-Grader (<https://otter-grader.readthedocs.io>). It supports 
    grading R scripts, R Markdown documents, and R Jupyter Notebooks.

Tools for converting Open-Source Tools for Training Resources
    (OTTR) courses into Leanpub or Coursera courses. 'ottrpal' is for use
    with the OTTR Template repository to create courses.

Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).

Analyses of OTU tables produced by 16S rRNA gene amplicon sequencing, as well as example data. It contains the data and scripts used in the paper Linz, et al. (2017) "Bacterial community composition and dynamics spanning five years in freshwater bog lakes," <doi: 10.1128/mSphere.00169-17>.

Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

The Open University Learning Analytics Dataset (OULAD) is available from 
    Kuzilek et al. (2017) <doi:10.1038/sdata.2017.171>.  The 'ouladFormat' 
    package loads, cleans and formats the OULAD for data analysis (each row of the
    returned data set is an individual student). The package’s main function,
    combined_dataset(), allows the user to choose whether the returned
    data set includes assessment, demographics, virtual learning environment (VLE),
    or registration variables etc.

Bayesian reconstruction of disease outbreaks using epidemiological
    and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser
    C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F,
    Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.

Empirical or simulated disease outbreak data, provided either as
    RData or as text files.