Depends: dplyr, utils
Imports: ggplot2, minpack.lm, plyr, pracma, tidyr, stats, naturalsort,
rlang

Depends: magrittr
Imports: base64enc, httr, jsonlite, tools, R6, listenv, magick,
ggplotify

Imports: methods, stats, MASS, oompaBase (>= 3.0.1), ClassDiscovery

Depends: R (>= 3.4)
Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph,
igraph, network, phangorn, stringdist, visNetwork, reshape2,
S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger,
future, future.apply, tools, ShortRead, Biostrings
Suggests: BiocManager, testthat, knitr, rmarkdown

Suggests: devtools (>= 2.4.5), BSgenome.Hsapiens.UCSC.hg38 (>= 1.4.5),
knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: genderdata (>= 0.6.0), ggplot2 (>= 3.3.0), knitr (>= 1.28),
testthat (>= 2.3.2), rmarkdown (>= 2.1), covr

Imports: data.table, jsonlite, httr, purrr

Suggests: dplyr, knitr, rmarkdown, testthat

Depends: R (>= 2.14.0), methods, utils, grDevices, MASS, GENEAread,
changepoint, signal, rpart
Suggests: waveslim, knitr, rmarkdown

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), GENEAread (>= 2.0.10),
GENEAclassify

Depends: R (>= 2.7.0), MASS, longitudinal (>= 1.1.3), fdrtool (>=
1.2.5)

Imports: xml2, Biobase, annotate, GEOquery, utils

Depends: R (>= 3.6)
Imports: clusterProfiler, dplyr, europepmc, fst, geneset, ggplot2,
ggraph, ggvenn, igraph, magrittr, openxlsx, stringr, stringi,
tidyr, rlang
Suggests: AnnotationDbi, cowplot, ComplexUpset, forcats, fgsea,
futile.logger, ggplotify, ggsci, ggrepel, ggridges, ggnewscale,
GOplot, GOSemSim, labeling, pheatmap, tm, treemap,
RColorBrewer, RCurl, reshape2, rio, rrvgo, testthat (>= 3.0.0),
wordcloud, knitr, rmarkdown, XML, xml2, httr

Depends: R (>= 4.3.0)
Imports: RcppML, Matrix, stats, methods, utils, Seurat (>= 4.3.0),
cluster, lsa, irlba, pheatmap, dendextend, viridis, colorspace
Suggests: knitr, rmarkdown, fgsea, msigdbr

Imports: readr, stringr, utils, httr, rvest, xml2, writexl, vcfR,
ggplot2, ggrepel

Suggests: VarianceGamma, actuar, SkewHyperbolic, RUnit

Depends: R (>= 3.0)
Imports: Rcpp (>= 1.0.8), RcppParallel (>= 5.1.4), ggplot2
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
Suggests: DataVisualizations, rgl, grid, mgcv, png, reshape2, fields,
ABCanalysis, plotly, deldir, methods, knitr (>= 1.12),
rmarkdown (>= 0.9)