Traditional phasing programs are limited to diploid organisms.
 Our method modifies Li and Stephens algorithm with Markov chain Monte Carlo
 (MCMC) approaches, and builds a generic framework that allows haplotype searches
 in a multiple infection setting. This package is primarily developed as part of
 the Pf3k project, which is a global collaboration using the latest
 sequencing technologies to provide a high-resolution view of natural variation
 in the malaria parasite Plasmodium falciparum. Parasite DNA are extracted from
 patient blood sample, which often contains more than one parasite strain, with
 unknown proportions. This package is used for deconvoluting mixed haplotypes,
 and reporting the mixture proportions from each sample.

'DEploid' (Zhu et.al. 2018 <doi:10.1093/bioinformatics/btx530>)
    is designed for deconvoluting mixed genomes with unknown 
    proportions. Traditional phasing programs are limited to diploid organisms. 
    Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo
    (MCMC) approaches, and builds a generic framework that allows haloptype
    searches in a multiple infection setting. This package provides R functions
    to support data analysis and results interpretation.

Provides functions to download, process, and visualize German geospatial 
    data across administrative levels, including states, districts, and municipalities. 
    Supports interactive tables and customized maps using built-in or external datasets.
    Official shapefiles are accessed from the German Federal Agency for Cartography and 
    Geodesy (BKG) <https://gdz.bkg.bund.de/>, licensed under dl-de/by-2-0 <https://www.govdata.de/dl-de/by-2-0>.

Fits latent (hidden) Markov models on mixed categorical and continuous (time series) data, otherwise known as dependent mixture models, see Visser & Speekenbrink (2010, <DOI:10.18637/jss.v036.i07>).

Methods for analyzing population dynamics and movement tracks simulated using the DEPONS model <https://www.depons.eu> (v.3.0), for manipulating input raster files, shipping routes and for analyzing sound propagated from ships.