Imports: Rcpp (>= 0.12.4), arules, methods
LinkingTo: Rcpp

Imports: jsonlite, curl, httr (>= 1.0.0), methods, mime, utils, cli,
keyring, tools
Suggests: testthat, xml2, sf, knitr, rmarkdown

Depends: R (>= 3.2), Matrix, quadprog, slam
Enhances: gurobi, Rcplex, Rmosek, pogs, osqp

Suggests: rmarkdown, knitr, httptest, ggplot2, testthat

Imports: Rcpp (>= 1.0.9), parallel, bayesm

Depends: R (>= 4.1)
Imports: cli, farver (>= 2.0.3), glue, labeling, lifecycle, R6,
RColorBrewer, rlang (>= 1.1.0), viridisLite
Suggests: bit64, covr, dichromat, ggplot2, hms (>= 0.5.0), stringi,
testthat (>= 3.0.0)

Imports: mgcv (>= 1.8-2), methods, stats, graphics, Matrix, splines

Depends: R (>= 4.1.0)
Imports: stats, nlme, MCMCglmm, utils, methods, graphics, car, gt,
knitr, kableExtra, readxl, mblm, magrittr, miniUI, rstudioapi
Suggests: testthat (>= 3.0.0), shiny, yaml, scplot

Depends: R(>= 4.0.0)
Imports: glmnet, stats, Seurat (>= 5.0.1), harmony, SeuratObject
Suggests: knitr, testthat (>= 3.0.0), rmarkdown

Depends: R (>= 3.4)
Imports: dplyr, ismev, magrittr, plyr, Rcpp, stats, sets, tibble, tidyr
LinkingTo: Rcpp, RcppArmadillo
Suggests: purrr, doParallel, foreach, ggplot2, knitr, MASS, pscl,
reshape2, rmarkdown, sp, testthat, gamlss.dist

Imports: stats, utils, coda, Hmisc, lattice

Depends: R (>= 3.5.0)
Imports: magrittr, xml2, stringr, dplyr, Seurat, SeuratObject, VAM,
utils
Suggests: knitr, pheatmap, rmarkdown, usethis

Suggests: gifski, knitr, leafem, leaflet, leafpop, mapview, raster,
spelling, rmarkdown, testthat (>= 3.0.0)

Imports: ActivePathways, AdaptGauss, coop, igraph, mixtools,
reticulate, methods

Depends: neldermead (>= 1.0-8), optimsimplex (>= 1.0-5), optimbase (>=
1.0-8)
Imports: lattice, grid, deSolve, utils
Suggests: knitr (>= 1.28),rmarkdown (>= 2.2)

Depends: R (>= 3.2)
Imports: jmvcore (>= 0.8.0), R6, ggplot2, cowplot, ggstance, ggridges

Imports: magrittr, dplyr, tidyr, ggplot2

Imports: Rcpp, RcppParallel (>= 5.1.4), pracma
Suggests: DataVisualizations, ggplot2, ggExtra, plotly, FCPS,
parallelDist, secr, ClusterR, geometry