Imports: stats, utils, methods, parallel, generics (>= 0.1.2)

Depends: QCA, admisc, methods, ggplot2, ggrepel, stargazer, R (>=
3.5.0)

Imports: cli, dplyr, glue, googledrive, jsonlite, rappdirs, tibble,
yesno

Depends: R (>= 4.0.0), methods, SeuratObject (>= 5.0.2)
Imports: cluster, cowplot, fastDummies, fitdistrplus, future,
future.apply, generics (>= 0.1.3), ggplot2 (>= 3.3.0), ggrepel,
ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba,
jsonlite, KernSmooth, lifecycle, lmtest, MASS, Matrix (>=
1.5-0), matrixStats, miniUI, patchwork, pbapply, plotly (>=
4.9.0), png, progressr, RANN, RColorBrewer, Rcpp (>= 1.0.7),
RcppAnnoy (>= 0.0.18), RcppHNSW, reticulate, rlang, ROCR,
RSpectra, Rtsne, scales, scattermore (>= 1.2), sctransform (>=
0.4.1), shiny, spatstat.explore, spatstat.geom, stats, tibble,
tools, utils, uwot (>= 0.1.10)
LinkingTo: Rcpp (>= 0.11.0), RcppEigen, RcppProgress
Suggests: ape, arrow, base64enc, Biobase, BiocGenerics, BPCells,
data.table, DESeq2, DelayedArray, enrichR, GenomicRanges,
GenomeInfoDb, glmGamPoi, ggrastr, harmony, hdf5r, IRanges,
leidenbase, limma, magrittr, MAST, metap, mixtools, monocle,
presto, rsvd, R.utils, Rfast2, rtracklayer, S4Vectors, sf (>=
1.0.0), sp, SingleCellExperiment, SummarizedExperiment,
testthat, VGAM

Depends: R (>= 4.1.0), shiny
Imports: utils, tools, stats, methods, Seurat (>= 5.4.0), SeuratObject
(>= 5.3.0), ggplot2 (>= 4.0.1), shinydashboard,
shinydashboardPlus, DT, shinycssloaders, patchwork (>= 1.3.2),
colourpicker, shinyWidgets, scales, shinyjqui, shinyBS,
ggalluvial, dplyr, qs2, circlize, reshape2, knitr, markdown
Suggests: ComplexHeatmap, MAST, limma, DESeq2, Signac

Depends: R (>= 4.1.0), sp (>= 1.5.0)
Imports: future, future.apply, generics, grDevices, grid, lifecycle,
Matrix (>= 1.6.4), methods, progressr, Rcpp (>= 1.0.5), rlang
(>= 0.4.7), spam, stats, tools, utils
LinkingTo: Rcpp, RcppEigen
Suggests: BPCells, DelayedArray, fs (>= 1.5.2), sf (>= 1.0.0), ggplot2,
HDF5Array, rmarkdown, testthat

Depends: R (>= 4.2.0)
Imports: httr, R6, purrr, jsonlite, cli, rlang, curl, glue, stringr,
utils, checkmate, DescTools, yaml, readr, data.table
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), stringi, withr,
remotes, pkgdown