Imports: combinat, dHSIC, fields, GET, ggplot2, graphics, MASS,
patchwork, reshape2, scatterplot3d, spatstat.explore,
spatstat.geom, spatstat.model, splancs, stats
Suggests: testthat (>= 3.0.0), rmarkdown, pkgdown, knitr, spatstat,
stpp, RColorBrewer, plot3D

Imports: plyr, phangorn, qvalue, widgetTools, calibrate, ggplot2,
R2jags, coda, scales, ape

Imports: assertthat, irlba, sva, pdist, matchingR, clue
Suggests: covr, testthat (>= 2.1.0), SummarizedExperiment, DESeq2,
knitr, rmarkdown, airway, limma, qvalue, edgeR

Depends: R (>= 3.5.0), TraMineR
Suggests: FactoMineR, descriptio, RColorBrewer, TraMineRextras,
WeightedCluster, ade4, cluster, questionr, rmdformats, dplyr,
purrr, ggplot2

Depends: R (>= 4.1.0)
Imports: checkmate, cli, collapse, data.table (>= 1.16.0),
future.apply, ggplot2, ggseqplot, graphics, grDevices, grid,
gridBase, igraph, lhs, Matrix, methods, nloptr, numDeriv,
patchwork, progressr, Rcpp (>= 0.12.0), RcppHungarian, rlang,
stats, TraMineR (>= 2.2-7), utils
LinkingTo: nloptr, Rcpp (>= 0.12.0), RcppArmadillo
Suggests: covr, knitr, MASS, nnet, testthat (>= 3.0.0),

Depends: R (>= 3.5.0)
Imports: Amelia, cluster, dfidx, doRNG, doSNOW, dplyr, foreach,
graphics, mlr, nnet, parallel, plyr, ranger, rms, stats,
stringr, TraMineR, TraMineRextras, utils, mice, parallelly
Suggests: R.rsp, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 2.15.1), foreach, doParallel
Suggests: testthat, doMC, rmarkdown, knitr

Depends: R (>= 4.1.0)
Imports: Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.6)
Suggests: knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges,
muscle, Rsamtools, prettydoc

Depends: R (>= 4.1)
Imports: data.table, doFuture, doRNG, fastglm, future, future.apply,
ggplot2, knitr, methods, stringr, survival, parallelly
Suggests: rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: Rcpp (>= 0.12.18.3), RcppParallel (>= 5.1.3), R6, rlang,
dplyr, stringi
LinkingTo: Rcpp, RcppParallel, BH
Suggests: knitr, rmarkdown, stringdist, pwalign, igraph, ggplot2

Suggests: knitr, rmarkdown, ggplot2, gganimate, tidyr, dplyr, av