Depends: R (>= 4.0.0), Matrix
Imports: rTensor, ica, fgsea, circlize, reshape2, parallel,
ComplexHeatmap, ggplot2, mgcv, utils, Rcpp, RColorBrewer,
dplyr, edgeR, sva, stats, Rmisc, ggpubr, msigdbr, sccore, NMF
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Suggests: methods, knitr, rmarkdown, testthat, coda.base, grid,
simplifyEnrichment, WGCNA, cowplot, matrixStats, stringr, zoo,
rlang, AnnotationDbi, GO.db, conos, pagoda2, betareg, slam, tm

Imports: ellipse, grDevices, graphics, stats

Imports: cluster, stats, grDevices, class

Imports: ggplot2, pheatmap, graphics, Seurat, GSVA, stats, utils,
downloader, pcaMethods, grDevices, gProfileR, limSolve,
gprofiler2, pbapply, ADAPTS, reshape,

Depends: R (>= 4.1.0)
Imports: stats, igraph, ggplot2, uwot, RANN, Seurat, dplyr, tidyr

Depends: R (>= 4.0), ggplot2 (>= 3.4.0)
Imports: alakazam (>= 1.4.1), shazam (>= 1.3.0), data.table,
doParallel, dplyr (>= 1.0), fastcluster, foreach, methods, Rcpp
(>= 0.12.12), rlang, scales, stats, stringi, tidyr (>= 1.0)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.00), behavr
Imports: data.table, readr, stringr, RSQLite, memoise
Suggests: testthat, covr, knitr, ggetho, zeitgebr

Suggests: CIARA, rmarkdown, testthat (>= 3.0.0), knitr

Depends: R (>= 3.5.0)
Imports: doParallel, foreach, iterators, parallel

Depends: R (>= 3.5.0)
Imports: data.table (>= 1.10.0), ggplot2, gridExtra, foreach,
doParallel, parallel, openxlsx, stringi, cli, xml2, xefun (>=
0.1.3)
Suggests: knitr, rmarkdown, pkgdown, testthat

Imports: car, e1071, gbm, partykit, randomForest, reshape2, sqldf,
stringr, stats, ggplot2, utils

Imports: Rcpp (>= 1.0.12), Rfast, igraph
LinkingTo: Rcpp
Suggests: Rfast2, knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0)
Imports: RcppEigen (>= 0.3.3.7), MCMCpack, optimx, FixedPoint, Rdpack,
Rcpp (>= 1.0.9), methods, stats, utils, rlang (>= 1.1.0)
LinkingTo: Rcpp (>= 1.0.9), RcppEigen (>= 0.3.3.7)
Suggests: testthat, ks, movMF, cubature, simdd, numDeriv

Depends: R (>= 3.5.0)
Imports: checkmate (>= 1.9.1), Rcpp (>= 1.0.0)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 2.0.0), cluster