Imports: dplyr, purrr, tidyr, rlang, grid, ggplot2, patchwork,
grDevices, magrittr, utils

Imports: Rcpp, Rdpack, MASS, mice, progress, magic, splines2

Depends: R (>= 3.3.0), bigmemory, Matrix
Imports: utils, stats, methods, stringr, CMplot
LinkingTo: Rcpp, RcppArmadillo (>= 0.9.600.0.0), RcppProgress, BH,
bigmemory, Matrix

Depends: R (>= 2.10)
Imports: graphics, grDevices, stats, utils, ncdf4
Suggests: covr, devtools, knitr, rmarkdown, roxygen2, spelling,
testthat

Imports: strawr, shape, fitdistrplus, igraph, ggraph, foreach,
doParallel, biomaRt, TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, org.Hs.eg.db,
Rcpp, AnnotationDbi, GenomicFeatures, parallel, IRanges,
S4Vectors, grDevices, graphics, stats, BiocManager,
BiocGenerics, GenomicRanges, pracma, signal, HiCocietyExample

Depends: R (>= 3.5.0)
Imports: restatapi (>= 0.24.0), data.table (>= 1.16.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: adjclust, auk, BiocGenerics, csaw, diffHic, dplyr, edgeR,
GenomeInfoDb, GenomicRanges, InteractionSet, limma, Matrix,
methods, reshape2, rlang, S4Vectors, stats,
SummarizedExperiment, utils, viridis

Depends: R (>= 3.5.0)
Imports: dplyr, ggnewscale, ggplot2, ggrepel, purrr, shiny, tibble,
tidyr, viridis, vroom
Suggests: knitr, rmarkdown, stringr, testthat (>= 3.0.0)

Imports: ggdendro, ggplot2 (>= 2.2.0), stats, Rcpp, scales, Matrix,
MASS, RColorBrewer, gtable, grDevices, methods, utils, viridis,
patchwork

Suggests: ape, pegas, knitr, rmarkdown, testthat

Depends: R (>= 3.2.0), MASS, Matrix, locfit, lbfgs

Imports: Matrix, matrixcalc, MaxPro, nloptr, purrr, quadprog, Rcpp (>=
1.0.12), RcppArmadillo, rlist, scales, stringr

Depends: R (>= 2.10)
Imports: htmlwidgets, magrittr, purrr, rlist, assertthat, zoo, dplyr
(>= 1.0.0), tibble (>= 1.1), stringr (>= 1.3.0), broom, xts,
quantmod, tidyr, htmltools, jsonlite, igraph, lubridate, yaml,
rlang (>= 0.1.1), rjson
Suggests: knitr, rmarkdown, survival, ggplot2, httr, viridisLite,
shiny, MASS, gapminder, forecast, geojsonio, testthat, covr,
spelling