Suggests: knitr, testthat, rmarkdown, readr, ggplot2

Depends: R (>= 3.0), utils, Matrix, MASS, hglm.data

Depends: R (>= 3.0), utils, Matrix, MASS, sp

Imports: cli, dplyr, httr2, memoise, prettyunits, purrr, readr,
stringr, tibble

Imports: crayon, dplyr, grDevices, lubridate, magrittr, methods, stats,
stringr, utils

Depends: R (>= 3.5.0), sf, stats, utils, MASS
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), furrr, progressr,

Depends: R (>= 3.0.2), lattice, stats, grid, latticeExtra, multcomp,
gridExtra (>= 2.0.0), graphics
Imports: reshape2, leaps, vcd, colorspace, RColorBrewer, shiny (>=
0.13.1), Hmisc, abind, Rmpfr (>= 0.6.0), grDevices, methods
Suggests: mvtnorm, car, Rcmdr, RcmdrPlugin.HH, microplot, MASS

Depends: R (>= 3.2.0), grDevices, graphics, methods, stats, utils,
surveillance (>= 1.14.0)

Imports: dplyr, purrr, tidyr, rlang, grid, ggplot2, patchwork,
grDevices, magrittr, utils

Imports: Rcpp, Rdpack, MASS, mice, progress, magic, splines2

Depends: R (>= 3.3.0), bigmemory, Matrix
Imports: utils, stats, methods, stringr, CMplot
LinkingTo: Rcpp, RcppArmadillo (>= 0.9.600.0.0), RcppProgress, BH,
bigmemory, Matrix

Depends: R (>= 2.10)
Imports: graphics, grDevices, stats, utils, ncdf4
Suggests: covr, devtools, knitr, rmarkdown, roxygen2, spelling,
testthat

Imports: strawr, shape, fitdistrplus, igraph, ggraph, foreach,
doParallel, biomaRt, TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db, org.Hs.eg.db,
Rcpp, AnnotationDbi, GenomicFeatures, parallel, IRanges,
S4Vectors, grDevices, graphics, stats, BiocManager,
BiocGenerics, GenomicRanges, pracma, signal, HiCocietyExample

Depends: R (>= 3.5.0)
Imports: restatapi (>= 0.24.0), data.table (>= 1.16.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: adjclust, auk, BiocGenerics, csaw, diffHic, dplyr, edgeR,
GenomeInfoDb, GenomicRanges, InteractionSet, limma, Matrix,
methods, reshape2, rlang, S4Vectors, stats,
SummarizedExperiment, utils, viridis

Depends: R (>= 3.5.0)
Imports: dplyr, ggnewscale, ggplot2, ggrepel, purrr, shiny, tibble,
tidyr, viridis, vroom
Suggests: knitr, rmarkdown, stringr, testthat (>= 3.0.0)