Imports: minpack.lm, fBasics, ggplot2, stats, dplyr
Suggests: covr, cowplot, testthat, knitr, rmarkdown

Imports: data.table, httr, magrittr, tibble, dplyr, cli

Imports: caTools, doBy, fda, npcure, StatMatch, stats

Imports: pcalg, igraph, RBGL, Matrix, methods

Depends: R (>= 3.5.0)
Imports: ape, network, igraph, gridBase, grid, ggmap, ggplot2

Imports: magrittr, httr, rjson, rvest, stringr, xml2

Imports: ggplot2, Matrix, plotly, stringr, RCurl, splines, methods,
utils, stats
Suggests: knitr, rmarkdown

Depends: R (>= 4.1)
Imports: magrittr, dplyr, tibble, tidyr, jsonlite, stringr, readxl, cli
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), withr, readr, cards,
cardx, covr, parameters, broom, broom.helpers

Imports: Rcpp, combinat, glmnet, methods, MASS

Imports: graphics, stats, survival, ggplot2, ggpubr, scales, plyr, np

Depends: R (>= 3.6.0), methods, utils, stats
Suggests: rmarkdown (>= 2.20), knitr (>= 1.42)

Depends: R (>= 3.3.0)
Imports: pastecs (>= 1.3.21), stats, dplyr (>= 1.0.0), rlang (>=
0.4.3), tidyr (>= 1.0.0), tibble, purrr, glue, tidyselect
LinkingTo: cpp11
Suggests: knitr, ggplot2, testthat (>= 3.0.0), rmarkdown, mopac, hms,
stringr, readr

Imports: formula.tools, Matrix, msm, plyr, mvtnorm, stats, survey,
utils
Suggests: car, data.table, GGally, ggplot2, kableExtra, knitr, readxl,
reshape2, rmarkdown, tidyr, R.rsp

Imports: randomForest, stringr, pbivnorm, Formula, maxLik, xtable, MASS

Imports: htmlwidgets, dplyr (>= 0.7.0), magrittr, shiny, jsonlite,
igraph, htmltools, purrr, scales, crosstalk

Depends: R (>= 3.5)
Imports: cli (>= 2.0.0), cowplot, data.table, dplyr, furrr (>= 0.2.0),
future, ggplot2 (>= 3.3.0), ggpubr, maftools, magrittr,
methods, NMF, purrr, Rcpp, rlang (>= 0.1.2), stats, tidyr
LinkingTo: Rcpp
Suggests: Biobase, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg19,
circlize, cluster, covr, digest, GenomicRanges, GenSA,
ggalluvial, ggcorrplot, ggfittext, ggplotify, ggrepel, IRanges,
knitr, lpSolve, markdown, matrixStats, nnls, parallel,
patchwork, pheatmap, quadprog, R.utils, RColorBrewer,
reticulate, rmarkdown, roxygen2, scales, synchronicity,
testthat (>= 3.0.0), tibble, UCSCXenaTools