Functions for generating progressively Type-II censored data in
    a mixture structure and fitting models using a constrained EM algorithm. It can also
    create a progressive Type-II censored version of a given real dataset to be considered for
    model fitting.

Principal component of explained variance (PCEV) is a statistical
    tool for the analysis of a multivariate response vector. It is a dimension-
    reduction technique, similar to Principal component analysis (PCA), that seeks
    to maximize the proportion of variance (in the response vector) being explained
    by a set of covariates.

Provides convenience functions and pre-programmed
    Stan models related to the paired comparison factor model. Its purpose
    is to make fitting paired comparison data using Stan easy. This
    package is described in Pritikin (2020) <doi:10.1016/j.heliyon.2020.e04821>.

We provide several algorithms to compute the genotype ancestry scores (such as eigenvector projections) in the case where highly correlated individuals are involved.

The package solves linear system of equations Ax=b by using Preconditioned Conjugate Gradient Algorithm where A is real symmetric positive definite matrix. A suitable preconditioner matrix may be provided by user. This can also be used to minimize quadratic function (x'Ax)/2-bx for unknown x.

Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm,
             with specific conditional independence tests and modified orientation rules. pcgen extends 
			 the approach of Valente et al. (2010) <doi:10.1534/genetics.109.112979> with reconstruction of 
			 direct genetic effects.

Large-scale gene expression studies allow gene network construction to uncover associations among genes. This package is developed for estimating and testing partial correlation graphs with prior information incorporated.

Contains logic for computing the statistical association of variable groups, i.e., gene sets, with respect to the principal components of genomic data.