Bayesian hierarchical methods for pathway analysis of genomewide association data: Normal/Bayes factors and Sparse Normal/Adaptive lasso. The Frequentist Fisher's product method is included as well.

Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>.

XKCD described a supposedly "bad" colormap that it called a "Painbow" (see <https://xkcd.com/2537/>). But simple tests demonstrate that under some circumstances, the colormap can perform very well, and people can find information that is difficult to detect with the ggplot2 default and even supposedly "good" colormaps like viridis. This library let's you use the Painbow in your own ggplot graphs.

Functions for creating color palettes, visualizing
    palettes, modifying colors, and assigning colors for plotting.

Color palettes generated from paintings.

Plots matrices of colours as grids of coloured squares - aka heatmaps, 
	guaranteeing legible row and column names, 
	without transformation of values, 
	without re-ordering rows or columns,
	and without dendrograms.

Many datasets and a set of graphics (based on ggplot2), statistics, effect sizes and hypothesis tests are provided for analysing paired data with S4 class.

Creates an interactive scatterplot matrix using the D3 JavaScript
    library. See <https://d3js.org/> for more information on D3.

Improving graphics by ameliorating order effects, using Eulerian tours 
    and Hamiltonian decompositions of  graphs. References for the methods presented 
    here are C.B. Hurley and R.W. Oldford (2010) <doi:10.1198/jcgs.2010.09136> and 
    C.B. Hurley and R.W. Oldford (2011) <doi:10.1007/s00180-011-0229-5>.

Performs the explicit calculation
    -- not estimation! -- of the Rasch item parameters for dichotomous and
    polytomous item responses, using a pairwise comparison approach. Person
    parameters (WLE) are calculated according to Warm's weighted likelihood
    approach.