TOmicsVis: Transcriptome Visualization Process Scheme

Transcriptome visualization from sample trait statistics to gene expression analysis. Six categories include "Samples Statistics", "Traits Analysis", "Differential Expression Analysis", "Advanced Analysis", "GO and KEGG Enrichment", "Tables Operations", with complete sample data.

Version: 2.0.0
Depends: R (≥ 3.5), Biobase (≥ 2.5.5), e1071 (≥ 1.7-0)
Imports: stats, utils, grid, graphics, grDevices, ggplot2, ggsci, reshape2, ggpubr, ggcorrplot, ggforce, vegan, venn, UpSetR, circlize, randomcoloR, ComplexHeatmap, EnhancedVolcano, GGally, survival, survminer, Rtsne, umap, dplyr, tidyr, clusterProfiler, enrichplot, ggnewscale, igraph, WGCNA, stringr, pheatmap, RColorBrewer, ggpolypath, factoextra, ggrepel, cowplot, ggplotify, plotrix, Mfuzz, shiny
Suggests: knitr, rmarkdown
Published: 2023-08-28
Author: Benben Miao ORCID iD [aut, cre], Wei Dong ORCID iD [aut]
Maintainer: Benben Miao <benben.miao at outlook.com>
BugReports: https://github.com/benben-miao/TOmicsVis/issues/
License: MIT + file LICENSE
URL: https://benben-miao.github.io/TOmicsVis/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: TOmicsVis results

Documentation:

Reference manual: TOmicsVis.pdf
Vignettes: Tutorials

Downloads:

Package source: TOmicsVis_2.0.0.tar.gz
Windows binaries: r-devel: TOmicsVis_2.0.0.zip, r-release: TOmicsVis_2.0.0.zip, r-oldrel: TOmicsVis_2.0.0.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available
Old sources: TOmicsVis archive

Linking:

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