Implements Affinity Propagation clustering introduced by Frey and Dueck (2007) <doi:10.1126/science.1136800>. The algorithms are largely analogous to the 'Matlab' code published by Frey and Dueck. The package further provides leveraged affinity propagation and an algorithm for exemplar-based agglomerative clustering that can also be used to join clusters obtained from affinity propagation. Various plotting functions are available for analyzing clustering results.
| Version: | 1.4.13 |
| Depends: | R (≥ 3.3.0) |
| Imports: | Rcpp (≥ 0.11.1), methods, Matrix, stats, graphics, grDevices |
| LinkingTo: | Rcpp |
| Suggests: | knitr |
| Published: | 2024-04-26 |
| DOI: | 10.32614/CRAN.package.apcluster |
| Author: | Ulrich Bodenhofer [aut, cre], Johannes Palme [ctb], Chrats Melkonian [ctb], Andreas Kothmeier [aut], Nikola Kostic [ctb] |
| Maintainer: | Ulrich Bodenhofer <ulrich at bodenhofer.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/UBod/apcluster |
| NeedsCompilation: | yes |
| Citation: | apcluster citation info |
| Materials: | README NEWS |
| In views: | Cluster |
| CRAN checks: | apcluster results |
| Reference manual: | apcluster.pdf |
| Vignettes: |
An R Package for Affinity Propagation Clustering |
| Package source: | apcluster_1.4.13.tar.gz |
| Windows binaries: | r-devel: apcluster_1.4.13.zip, r-release: apcluster_1.4.13.zip, r-oldrel: apcluster_1.4.13.zip |
| macOS binaries: | r-devel (arm64): apcluster_1.4.13.tgz, r-release (arm64): apcluster_1.4.13.tgz, r-oldrel (arm64): apcluster_1.4.13.tgz, r-devel (x86_64): apcluster_1.4.13.tgz, r-release (x86_64): apcluster_1.4.13.tgz, r-oldrel (x86_64): apcluster_1.4.13.tgz |
| Old sources: | apcluster archive |
| Reverse depends: | LPKsample |
| Reverse imports: | AnimalSequences, bioregion, Clustering, cogena, debCAM, IPCAPS, ipft, kebabs, Linnorm, mina, outlierensembles, schemr, SPIAT, WebGestaltR |
| Reverse suggests: | autonomics, bluster, DAPAR, diceR, FCPS, GeneExpressionSignature, mlr3cluster, shipunov, simplifyEnrichment |
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