# bedr 1.0.7 ========================== - forced vcf2bed not to print genomic coordinates in R scientific notation for interoperability with other processors # bedr 1.0.6 ========================== - updated support for tabix version >1.1. tabix deprecated option -B is now replaced with -R # bedr 1.0.5 ========================== - fixed incorrect ordering of chromosome table returned by get.chr.length() - [rolled back] # bedr 1.0.4 ========================== - Added rmarkdown in Suggests section - Parameterised test.region.similarity() with gaps.file and repeats.file to support custom files - Fixed bug when bedtools 'coverage' output is post-processed in bedr - Fixed is.valid.seq() to comply with inputs and outputs as described in docs - Exposed utility function bed2index() via NAMESPACE to support its direct usage # bedr 1.0.3 ========================== - Standardised function name; renamed snm() to bedr.snm.region() - Listed SystemRequirements to the package metadata - Added support for Human hg38 genome assembly # bedr 1.0.2 ========================== - Fixed compatibility with data.table >= v1.9.6 for data.table::fread() call # bedr 1.0.1 ========================== - Fixed sort --version command as Solaris does not support --version which is GNU specific # bedr 1.0.0 ========================== - Added bedr's first release