dierm 1.2.2, released
11-07-2023
- Modified
vcf2diem so that markers without homozygous
genotypes or markers with only one heterozygous genotype are removed as
non-informative for genome polarisation.
- Updated vignette
Importing data for genome polarisation.
- Fixed formatting in
vcf2diem documentation.
diemr 1.2.1, released
19-04-2023
- Added link to bug reports page.
- Fixed bug in
vcf2diem for multiallelic SNPs.
diemr 1.2, released
21-03-2023
- Added
vcf2diem to convert SNP in vcf format to diem
genotypes.
- Added
myotis vcf dataset with documentation.
- Added vignette
Importing data for genome polarisation.
- Updated CITATION.
diemr 1.1.1, released
02-02-2023
- Fixed potential infinite loop error in halting condition of
diem.
diemr 1.1, released
19-10-2022
- Updated README file.
- Added user-choice of colours in
plotPolarized.
- Updated CITATION.
- Added efficient correction for other markers in likelihood
calculation.
diemr 1.0, released
28-03-2022
- First public release.
- Updated citation.
diemr 0.3, build 12-01-2022
- Added user choice of null polarities in the diem argument
markerPolarity.
- Added FAQ to vignette.
- Added functions
importPolarized and
plotPolarized.
diemr 0.2.1, build 02-12-2021
- Added examples to documentation.
diemr 0.2, build 01-12-2021
- Added ploidy flexibility across compartments and across
individuals.
- Updated documentation.
diemr 0.1.2, build 09-07-2021
- Updated hybrid index calculation for consistency with
diploid/haploid individuals.
diemr 0.1.1, build 09-07-2021
- Added tolerance for unknown genotypes encoded either as
_ or U.
- Added vignette
diemr: Diagnostic index expectation maximisation in R.
- Added a
NEWS.md file to track changes to the
package.
- Added
README.md with quick start analysis
instructions.
- Added default
ChosenInds to include all individuals to
diem.
diemr 0.1, build 29-06-2021