neurobase is back on.orient_rpi* functionality to
neurobase rather than fslr due to
dependencies.fsl_std_file.rpi* functionality that uses RNifti
and is likely what we’d want to use.getForms (and therefore a lot of stuff)
with FSL version 6.0 and greater.quickshear_deface_image to remove faces based on
the QuickShear method and nipy/quickshear.mridefacer to add to the anonymization
pipelines.invert_xfm and other convert_xfm
functionality.fslreorient2std_mat to get the matrix output from
fslreorient2std.face_removal_mask for removal of faces, based on
pydeface.fslsmooth to return an output file if
retimg = FALSE.reverse_rpi_orient_file that was causing
ERROR: Could not open file /usr/local/fsl/bin/fslswapdim: 107: [: =: unexpected operator
error.topup to the exports.fsl_resample.fsl_cluster. Removed cluster from
exports due to conflicts.read_xfm for reading transformations.mid_sagittal_align for flipping.matrixStats as unnecessary dependency.topup and other DTI-based
tools.susan to work properly.fsleyes in the future release.readnii/writeniiAdded readnii and writenii
Added ortho_diff
Moved functions such as cal_img to oro.nifti package. They are all legacies, such as cal_img still works, but calibrateImage and other camelCase functions have been made default.
Fixed fsl_biascorrect.