# iNEXT 2.0.12 - Fixes vignettes error for `ggplot2` update. - Adds argument `conf` for `estimateD` function. - Fixes issue #12, 13 # iNEXT 2.0.13 - Fixes the plot display `NA` in the legend (After `ggplot2` was updated to version 2.2.0) # iNEXT 2.0.14 - Fixes the warning message for `EstiBootComm.Ind` and `EstiBootComm.Sam`. # iNEXT 2.0.15 - Modify the incidence case to make it consistent with abundance case. # iNEXT 2.0.16 - Modify the BootstrapFun for oddly warning message (issue #31). # iNEXT 2.0.17 - Modify Error in duplicated levels/labels (issue #25). # iNEXT 2.0.18 - Update ggiNEXT.R (Fix legend problem of ggiNEXT). # iNEXT 2.0.19 - Modified `Dqhat.Ind` and `Dqhat.Sam` to make them more efficient. # iNEXT 2.0.20 - Modify Error in R 4.0.0 (issue #46). # iNEXT 2.1.0 - Add the parameter q to estimateD function. And its output form is correspondingly slightly changed. - Change the facet label of diversity order in ggiNEXT from `0`, `1`, `2` to `q = 0`,`q = 1`, `q = 2`, respectively. - Change the default colors of ggiNEXT to make them color-blind friendly. - Improve the efficiency of `Dqhat.Ind` and rename it as `TD.m.est`. (Similarly, `Dqhat.Sam` is renamed as `TD.m.est_inc`) # iNEXT 2.1.1 - Change default value of `level` of `estimateD` if it is not specified by users. - Correct version number in description file. # iNEXT 2.1.2 - Correct the facet label when `type = 2` in `ggiNEXT`, which is supposed not to appear. - Slighty modification on the confidence interval method for asymptotic estimates. - Fix a bug in the incidence extrapolation. - Fix a bug in the asymptotic profile. # iNEXT 2.1.3 - Fix a bug in estimateD when the necessary size for a small coverage is 1. # iNEXT 2.1.4 - Now the parameter "level" in estimateD can be a vector. - Slightly modify the bootstrap method in estimateD when base="coverage". # iNEXT 2.1.5 - Fix a bug about the C.I of estimateD when the length of desired 'level' > 1. # iNEXT 2.1.6 - Modify the C.I of asymptotic diversity of q = 1 and 2: cancel the trucation. # iNEXT 2.1.7 - Slightly modify the example of estimateD. # iNEXT 2.2.0 - Add the coverage-based bootstrap method into function 'iNEXT()'. - Notation changes in column names: 'site'/'Site' -> 'Assemblage', 'order' -> 'Order.q', 'method' -> 'Method'. - Notation changes in arguments 'facet.var' and 'color.var' of function 'ggiNEXT()': 'none' -> 'None', 'order' -> 'Order.q', 'site' -> 'Assemblage', 'both' -> 'Both'. - Now there two elements(data.frames) in $iNextEst, the first is $size_based and the second is $coverage_based, instead of N elements(data.frames), where N is the # of assemblages. - An additional character column 'Assemblage' is added into each element(data.frame) of $iNextEst to identify different assemblages. # iNEXT 2.2.1 - Fix the notations in function 'EstimateD()': 'site'/'Site' -> 'Assemblage' # iNEXT 2.2.2 - Update README.md and README.Rmd at github according to the changes in iNEXT 2.2.0 and iNEXT 2.2.1. - Add an additional choice of argument 'type' in ggiNEXT. Now type = 4 will perform the same plotting function as type = 3 from the previous version (before 2.2.0). # iNEXT 2.2.3 - Remove the second change in iNEXT 2.2.2. # iNEXT 2.2.5 - Fix a minor potential bug invChat.Ind and invChat.Sam that may occur when f1 = 0, f2 > 0. # iNEXT 3.0.0 - Update vignette, package manual, and remove functions 'ChaoSpecies' and 'ChaoEntropy'. # iNEXT 3.0.1 - Improved color palette generation in `ggiNEXT`. This update addresses the limitation of the fixed 8-color palette, enhancing clarity and user experience in data representation. - Update CITATION file in accordance with the CRAN policies.