mbmixture: Microbiome Mixture Analysis

Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2019) <doi:10.1101/529040>.

Version: 0.2-5
Depends: R (≥ 3.1.0)
Imports: stats, parallel, numDeriv
Suggests: knitr, rmarkdown, testthat, devtools, roxygen2
Published: 2020-10-22
Author: Karl W Broman ORCID iD [aut, cre]
Maintainer: Karl W Broman <broman at wisc.edu>
BugReports: https://github.com/kbroman/mbmixture/issues
License: MIT + file LICENSE
URL: https://github.com/kbroman/mbmixture
NeedsCompilation: no
Citation: mbmixture citation info
Materials: README NEWS
CRAN checks: mbmixture results

Downloads:

Reference manual: mbmixture.pdf
Vignettes: R/mbmixture User Guide
Package source: mbmixture_0.2-5.tar.gz
Windows binaries: r-devel: mbmixture_0.2-5.zip, r-release: mbmixture_0.2-5.zip, r-oldrel: mbmixture_0.2-5.zip
macOS binaries: r-release: mbmixture_0.2-5.tgz, r-oldrel: mbmixture_0.2-5.tgz

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