minimapR: Wrapper for 'minimap2'

Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".

Version: 0.0.1.0
Depends: R (≥ 4.0.0), Rsamtools, git2r, pafr
Suggests: knitr, rmarkdown
Published: 2024-07-21
DOI: 10.32614/CRAN.package.minimapR
Author: Jake Reed ORCID iD [aut, cre], Pradyun Pulipaka [ctb]
Maintainer: Jake Reed <hreed.ga at gmail.com>
License: MIT + file LICENSE
URL: https://github.com/jake-bioinfo/minimapR
NeedsCompilation: no
Materials: README
CRAN checks: minimapR results

Documentation:

Reference manual: minimapR.pdf
Vignettes: Using minimapR

Downloads:

Package source: minimapR_0.0.1.0.tar.gz
Windows binaries: r-devel: minimapR_0.0.1.0.zip, r-release: minimapR_0.0.1.0.zip, r-oldrel: minimapR_0.0.1.0.zip
macOS binaries: r-release (arm64): minimapR_0.0.1.0.tgz, r-oldrel (arm64): minimapR_0.0.1.0.tgz, r-release (x86_64): minimapR_0.0.1.0.tgz, r-oldrel (x86_64): minimapR_0.0.1.0.tgz

Linking:

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