## ----setup_simulation, message=FALSE, warning=FALSE, eval=FALSE---------------
# library(octawave)
# library(plotly)
# library(sync3d)
# 
# # 1. Simulate a quantum wave state (Harmonic Lattice)
# time_vec <- seq(0, 4 * pi, length.out = 100)
# raw_quantum_data <- data.frame(
#   X = sin(time_vec),
#   Y = cos(time_vec)
# )
# 
# # 2. Execute spectral analysis
# analysis_results <- wave2lyze(raw_quantum_data)
# 
# # 3. Construct the topological bridge for sync3d
# sync_structures <- prep_sync3d(analysis_results)
# 
# # 4. Initialize base plot on Trace 0 (Strict Mode: Markers)
# base_plot <- plot_ly(
#   data = sync_structures$nodes,
#   x = ~x, y = ~y, z = ~z,
#   type = 'scatter3d',
#   mode = 'markers',
#   marker = list(size = 4, color = '#008080')
# )
# 
# # 5. Inject WebGL synchronized edge matrix
# final_plot <- add_synchronized_3d_edges(base_plot, sync_structures$edges)
# final_plot