palmid: RdRP Analysis Suite

R Analysis suite for viral RNA dependent RNA polymerase (RdRP). Statistical and meta-data analysis of 'palmscan' output and 'palmDB'/ 'DIAMOND' alignment files. Cross reference an input RNA virus against 145,000 RdRP identified in the Serratus project.

Version: 0.0.3
Depends: R (≥ 3.5.0), dplyr, ggplot2 (≥ 3.3.3)
Imports: dbplyr, downloadthis, DBI, DT, ggplotify, ggwordcloud, ggExtra, grDevices, gridExtra (≥ 2.3), htmltools, htmlwidgets, leaflet, methods, plotly, rmarkdown, RPostgreSQL, scales, stats, utils, viridisLite
Suggests: sf, rnaturalearth, rnaturalearthdata
Published: 2021-10-15
Author: Artem Babaian [aut, cre]
Maintainer: Artem Babaian <artem at rRNA.ca>
BugReports: https://github.com/ababaian/palmid/issues
License: AGPL-3
URL: https://serratus.io/palmid
NeedsCompilation: no
Materials: README NEWS
CRAN checks: palmid results

Documentation:

Reference manual: palmid.pdf

Downloads:

Package source: palmid_0.0.3.tar.gz
Windows binaries: r-devel: palmid_0.0.3.zip, r-release: palmid_0.0.3.zip, r-oldrel: palmid_0.0.3.zip
macOS binaries: r-release (arm64): palmid_0.0.3.tgz, r-release (x86_64): palmid_0.0.3.tgz, r-oldrel: palmid_0.0.3.tgz

Linking:

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