All notable changes to this project will be documented in this file. The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
HTML syntax from documented functions
(i.e., div elements nested inside p elements).
See #30
(i.e., the reply by @mihaiconstantin) for more
details.HTML validation problems during the
CRAN checks. Closes #30.S3 methods..vue components in
/docs/.vuepress/components/.Markdown.vue for rendering reusable
markdown.powerly,
validate, and generate_model.S3 methods plot.Method,
plot.Validation, and summary.CSS breakpoints for mobile views.VuePress. The
deployed documentation files can be accessed at powerly.dev. ### ChangedREADME.md
file.inst/ under
docs/.ASCII console logo to include domain name for
the online documentation.NEWS.md
to allow CRAN to parse the version information.positive (i.e., for the proportion of
positive edges), range (i.e., for the interval from which
to sample values for the partial correlations), and
constant (i.e., to vary the magnitude of the partial
correlations). See Yin and Li
GgmModel data when
variables with SD = 0 are detected.duration field to StepTwo class to
record the execution time for the spline fitting procedureCNAME for apex domain
https://powerly.dev served via GitHub Pages.mvnorm package (#11). Closes
#5.cores in Backend
when more cores than available were requested (#12). Closes #2.StepThree plot (#13). Closes #3.Method and step classes
execution time (#15). The duration is now recorded in seconds. Closes
#9.dev branch from all GitHub
workflows (#14). Switched to the GitHub flow. Closes
#4.README.md and removed open
issues badge.NEWS file.0.0000001) for test checking
whether the spline coefficients are estimated correctly.Range
instance to run only when the the 2.5th and 97.5th selected sample sizes
are different quantities.summary S3 method support for
Validation class objects.R version to the CI pipeline for the
R CMD check job.R CMD check workflow to use check
action from r-lib/actions..data and .env pronoun calls
(i.e., from the rlang package) to variables used inside
data-masking function (e.g., ggplot2::aes()) to avoid
CRAN notes regarding missing bindings for global variables.
See this question for more information:
https://stackoverflow.com/q/9439256/5252007.roxygen2 templates for documenting the public
API and S3 methods.plot() methods from R6 classes
into standalone S3 methods.dev..Random.seed. The .Random.seed is caused by
loading the bootnet package which in turn loads the
snow package. The snow package uses the
RNG within the .onLoad() function to draw from
the uniform distribution and set a port number. The result of this
operation is a .Random.seed in the .GlobalEnv.
For more information see: https://stackoverflow.com/q/69866215/5252007
and https://github.com/SachaEpskamp/bootnet/issues/82.covr::codecov().Validation class plot to README.md
file.GgmModel tests to vary various model estimation
and data generation parameters.testthat::expect_equal to test with a tolerance
of 1e-6 for Basis and
Solver.GgmModel estimation with
qgraph::EBICglasso().Validation class.NAMESPACE via
Roxygen2.README.md (e.g., CRAN version
and check status).DESCRIPTION file.GGM estimation test would fail due to a
precision level set too high.Description field in DESCRIPTION
file to follow CRAN guidelines.powerly() documentation to use
the \doi{} syntax as indicated by CRAN member Uwe
Ligges.DESCRIPTION to start with capital letter as
indicated by CRAN member Uwe Ligges.DESCRIPTION.summary() support for
Method and Validation objects.ggplot plots and saving support for
StepOne, StepTwo, StepThree and
Validation objects.R base plots to ggplot2 and
patchwork.Description in
DESCRIPTION file as per comment by CRAN member Julia
Haider.StepOne unit test.GGM model estimation.
Restricted the unit test to compare the estimated edge weights up to 7
digits precision.usethis::use_github_action("test-coverage") and badge to
README.md.Backend when the machine
had only 1 or 2 cores. The previous version would result in an error
when the machine contained only 1 or 2 cores. Now, when the machine has
only 1 core, the cluster creation will fail, with a message that not
enough cores are available. When the machine has 2 cores, all 2 cores
are used. In all other cases, the number of cores used is given by the
number of cores on the machine minus one.R-CMD-check.yaml.README.md and package startup logo to only show
major version.method argument of
validate() to ensure that only instances of
Method class (i.e., produced by powerly() are
passed).Backend stopping to on.exit() in
powerly() to ensure the cluster is stopped no matter the
execution status of the function.NEWS.md for
1.2.0.usethis::use_github_action_check_standard().R session is not
interactive.NEWS.md for previous
releases..remove_missing() to clear any NA
values that may be present in .measures in
StepOne class after the Monte Carlo
procedure.validate() public API to validate method
results.Validation class to perform validation on a
Method object.README.md for validation()
and fixed images.StepThree class.StepThree class
plots.powerly() public API to run the
method.generate_model() public API to generate
true models.Method
class.Method class to run the method steps
iteratively.Backend class to manage parallel clusters.R6 OOP style into
first stable release.ggm object.statistic.power() and statistic.mean().validate.recommendation() prototype for validating
a sample size recommendation.run.method() prototype for running all method steps
iteratively.run.step.1() prototype for Step 1 of the
method.run.step.2() prototype for Step 2 of the
method.run.step.3() prototype for Step 3 of the
method.Validation class.parallel::setclusterSetRNGStreampkgdown generator.README.md file from
README.Rmd via knitr.StepThree for
better precision.