vctrs to Suggests to fix
the issue that fails the unit test due to an update in
testthat package.design_filter ensures frequency window cuts off within
0 to Nyquistfftfilt allows matrix inputfiltfilt with a=1 (FIR
filter) calls fftfilt to speed uppwelch incorrect power calculation. The results
agrees mostly with Matlab functionhamming window as the default in
pwelch; exported additional window options such as
blackman families, bohmanwin,
flattopwin, and hanningc++ template issue caused by
vcglib, which fails to compile under
clang19decimate agrees with Matlab now (both
fir and iir filters)freqz2 to obtain the frequency response of
a digital filter (similar to gsignal::freqz but with more
accurate cutoff frequency calculation and more customize plots)diagnose_filtercheck_filter to obtain expected magnitude at
given frequency and reciprocal condition numbersignal and use gsignal
insteaddesign_filter for both fir and
iir filters, allowing both entry and intermediate users to
design band-pass/stop, low/high pass filters easily.iir filter order generated from
design_filter will be checked against
rcond_filter_ar (reciprocal condition number) to make
improve the numeric stabilitydijkstra; the
package passed asan, valgrind test provided by
rhub2dijkstra method occasionally causing memory
error. New method is much faster now.plot.pwelch not displaying the signal names
correctly.c++17 requirement and supports 11, 14, and 17
standardsFIR1 filterpwelch throwing warnings when signal is zero (or
zero power)dijkstra to find shortest paths in
meshvcglibC++ template issue via type explicit callsfir1 filter when band-passing signals with
incorrect npwelch plot works with zero power now;
mv_pwelch plot error fixedband_pass2 to avoid NA generated
when upper band frequency is NyquistVector3, Matrix4,
Quaternion for in-place calculationWASMCRAN: “format string is not a
string literal (potentially insecure)”filearraygrow_volumemesh_from_volume no longer throw errors if the mesh
does not form a manifoldfill_surface to fill in volume based on given
surface meshmesh_from_volume to generate mesh from volume.
This function can be used together with fill_surface to
generate surface enveloperegister_volume to align two imaging data using
linear or non-linear registrationfftw on 2D image and 3D
volume data1D, 2D,
3D data using FFTpwelch frequency not starting from zero
issueTinyThread using the latest pull-request to
RcppParallelinterpolate_stimulation to detect stimulation
signals within the response and interpolate with smooth signalssplinesfast_quantile and fast_mvquantile to
improve the quantile/median calculation speedplot_signals plotting range too large when
signals have large values (such as stimulation)TinyThreads library memory leak issuesdiagnose_channel, avoid duplicated
pwelch calculationfilter, filtfilt that produce
the same results as Matlab (with precision error)pwelch as a row-major
matrix to speed up calculationwavelet_cycles_suggest to provide default
calculation of wavelet cyclessignature to wavelet to resolve
potential cache conflicts when running in multiple processes. (This
allows RAVE to run wavelet on multiple subjects at the same
time)pwelchpwelch sampling frequency to be greater than
the signal lengthpwelch plot to
properly handle graph text, margin, axisplot_signals to plot multiple functional data
within the same canvasC++ code to inst/includes so other
users can dynamically link to the functions
(https://github.com/dipterix/ravetools/issues/5)fftw
related codefftw plans to respect the flagsC++ to convert raw binary bytes to
uint, int, float, and
stringParallel processes might use different temporary directory paths. To improve the performance, it is recommended to set a shared temporary directory, hence this version
RAVETOOLS_TEMPDIR or option
ravetools.tempdir.This version fixes a memory issue reported by CRAN check
(gcc-UBSAN).
NA_INTEGER
is subtracted by one before being converted to R_xlen_t
type. This update fixes this issueRcppParallel and copied part of it into
inst/include folder, with TBB removed under
the GPL-3 license framework.This is an initial version of ravetools. Although a bare
minimal set of signal processing functions are provided, it is
sufficient to perform preprocess pipelines on most iEEG
signals. Some functions are added from the dipsaus package,
with considerable performance improvement. The C++
functions have been tested on all major platforms, with different
architectures (ARM, i386,
x64).
README file to demonstrate basic usageNEWS.md file to track changes to the
package.decimate with FIR filters
creating the same results as in Matlabdetrend function todiagnose_channel to visually inspect channel
signalsmorlet_wavelet to enable fast and memory
efficient wavelet decomposition; the result agrees with existing
Matlab code with floating errors (10^-7)multitaperpwelch (Welch periodogram)notch_filter to remove line noiseThe following functions are implemented in C++ parallel.
They tend to be faster than normal base-R implementations, depending on
the number of CPU cores used.
collapse to collapse arraysshift_array to shift array along certain
indicesfast_cov to calculate pearson
covariance matrix in parallelbaseline_array to calculate baseline arrays with
multiple margins