AbstractParameterAliasable(const std::string &prefix) | bpp::AbstractParameterAliasable | inline |
AbstractParameterAliasable(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
AbstractParametrizable(const std::string &prefix) | bpp::AbstractParametrizable | inline |
addParameter_(Parameter *parameter) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
addParameters_(const ParameterList ¶meters) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
bpp::aliasParameters(const std::string &p1, const std::string &p2)=0 | bpp::ParameterAliasable | pure virtual |
bpp::aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0 | bpp::ParameterAliasable | pure virtual |
bpp::AbstractParameterAliasable::aliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
bpp::AbstractParameterAliasable::aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose) | bpp::AbstractParameterAliasable | virtual |
applyParameters() | bpp::DirichletDiscreteDistribution | protected |
clone() const | bpp::DirichletDiscreteDistribution | inlinevirtual |
deleteParameter_(size_t index) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
deleteParameter_(std::string &name) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
deleteParameters_(const std::vector< std::string > &names) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
DirichletDiscreteDistribution(std::vector< size_t > vn, Vdouble valpha) | bpp::DirichletDiscreteDistribution | |
discretize(Vdouble &valpha) | bpp::DirichletDiscreteDistribution | protected |
fireParameterChanged(const ParameterList ¶meters) | bpp::DirichletDiscreteDistribution | virtual |
bpp::getAlias(const std::string &name) const =0 | bpp::ParameterAliasable | pure virtual |
bpp::AbstractParameterAliasable::getAlias(const std::string &name) const | bpp::AbstractParameterAliasable | virtual |
getAliasedParameters(const ParameterList &pl) const | bpp::AbstractParameterAliasable | |
bpp::getAliases() const =0 | bpp::ParameterAliasable | pure virtual |
bpp::AbstractParameterAliasable::getAliases() const | bpp::AbstractParameterAliasable | virtual |
getCategories() const | bpp::DirichletDiscreteDistribution | |
getFrom(const std::string &name) const | bpp::AbstractParameterAliasable | |
getFromParameters(const ParameterList &pl) const | bpp::AbstractParameterAliasable | |
bpp::getIndependentParameters() const =0 | bpp::ParameterAliasable | pure virtual |
bpp::AbstractParameterAliasable::getIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
getName() const | bpp::DirichletDiscreteDistribution | inline |
bpp::getNamespace() const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::getNamespace() const override | bpp::AbstractParametrizable | inlinevirtual |
getNumberOfCategories() const | bpp::DirichletDiscreteDistribution | virtual |
bpp::getNumberOfIndependentParameters() const =0 | bpp::ParameterAliasable | pure virtual |
bpp::AbstractParameterAliasable::getNumberOfIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
bpp::getNumberOfParameters() const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::getNumberOfParameters() const override | bpp::AbstractParametrizable | inlinevirtual |
getParameter(const std::string &name) const | bpp::AbstractParametrizable | inline |
getParameter(size_t i) const | bpp::AbstractParametrizable | inlineprotected |
getParameter(size_t i) | bpp::AbstractParametrizable | inlineprotected |
getParameter_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
getParameter_(size_t index) | bpp::AbstractParametrizable | inlineprotected |
getParameter_(size_t index) const | bpp::AbstractParametrizable | inlineprotected |
bpp::getParameterNameWithoutNamespace(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::getParameterNameWithoutNamespace(const std::string &name) const override | bpp::AbstractParametrizable | virtual |
bpp::getParameters() const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::getParameters() const override | bpp::AbstractParametrizable | inlinevirtual |
bpp::getParameters_()=0 | bpp::Parametrizable | protectedpure virtual |
bpp::AbstractParameterAliasable::getParameters_() override | bpp::AbstractParametrizable | inlineprotectedvirtual |
bpp::getParameterValue(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::getParameterValue(const std::string &name) const override | bpp::AbstractParametrizable | inlinevirtual |
getParameterWithNamespace_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
getParameterWithNamespace_(const std::string &name) const | bpp::AbstractParametrizable | inlineprotected |
getProbability(Vdouble &category) const | bpp::DirichletDiscreteDistribution | virtual |
getValueCategory(Vdouble &Vvalue) const | bpp::DirichletDiscreteDistribution | virtual |
hasIndependentParameter(const std::string &name) const | bpp::AbstractParameterAliasable | inline |
bpp::hasParameter(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::hasParameter(const std::string &name) const override | bpp::AbstractParametrizable | inlinevirtual |
includeParameters_(const ParameterList ¶meters) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
bpp::matchParametersValues(const ParameterList ¶meters)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::matchParametersValues(const ParameterList ¶meters) override | bpp::AbstractParametrizable | inlinevirtual |
MultipleDiscreteDistribution() | bpp::MultipleDiscreteDistribution | inline |
operator=(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
bpp::parameter(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::parameter(const std::string &name) const override | bpp::AbstractParametrizable | inlinevirtual |
ParameterAliasable() | bpp::ParameterAliasable | inline |
Parametrizable() | bpp::Parametrizable | inline |
rand() const | bpp::DirichletDiscreteDistribution | virtual |
randC() const | bpp::DirichletDiscreteDistribution | virtual |
bpp::removeConstraint(const std::string &name)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::removeConstraint(const std::string &name) override | bpp::AbstractParametrizable | inlinevirtual |
resetParameters_() | bpp::AbstractParameterAliasable | inlineprotected |
bpp::setAllParametersValues(const ParameterList ¶meters)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::setAllParametersValues(const ParameterList ¶meters) override | bpp::AbstractParametrizable | inlinevirtual |
bpp::setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) override | bpp::AbstractParametrizable | inlinevirtual |
bpp::setNamespace(const std::string &prefix)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::setNamespace(const std::string &prefix) | bpp::AbstractParameterAliasable | virtual |
bpp::setParametersValues(const ParameterList ¶meters)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::setParametersValues(const ParameterList ¶meters) override | bpp::AbstractParametrizable | inlinevirtual |
bpp::setParameterValue(const std::string &name, double value)=0 | bpp::Parametrizable | pure virtual |
bpp::AbstractParameterAliasable::setParameterValue(const std::string &name, double value) override | bpp::AbstractParametrizable | inlinevirtual |
shareParameter_(const std::shared_ptr< Parameter > ¶meter) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
shareParameters_(const ParameterList ¶meters) | bpp::AbstractParameterAliasable | inlineprotectedvirtual |
bpp::unaliasParameters(const std::string &p1, const std::string &p2)=0 | bpp::ParameterAliasable | pure virtual |
bpp::AbstractParameterAliasable::unaliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
vpBDD_ | bpp::DirichletDiscreteDistribution | private |
~AbstractParameterAliasable() | bpp::AbstractParameterAliasable | inlinevirtual |
~AbstractParametrizable() | bpp::AbstractParametrizable | inlinevirtual |
~Clonable()=default | bpp::Clonable | virtual |
~DirichletDiscreteDistribution() | bpp::DirichletDiscreteDistribution | |
~MultipleDiscreteDistribution() | bpp::MultipleDiscreteDistribution | inlinevirtual |
~ParameterAliasable() | bpp::ParameterAliasable | inlinevirtual |
~Parametrizable() | bpp::Parametrizable | inlinevirtual |