bpp::HmmEmissionProbabilities Member List

This is the complete list of members for bpp::HmmEmissionProbabilities, including all inherited members.

clone() const override=0	bpp::HmmEmissionProbabilities	pure virtual
computeD2EmissionProbabilities(std::string &variable) const	bpp::HmmEmissionProbabilities	inlinevirtual
computeDEmissionProbabilities(std::string &variable) const	bpp::HmmEmissionProbabilities	inlinevirtual
getD2EmissionProbabilities(size_t pos) const	bpp::HmmEmissionProbabilities	inlinevirtual
getDEmissionProbabilities(size_t pos) const	bpp::HmmEmissionProbabilities	inlinevirtual
getHmmStateAlphabet() const =0	bpp::HmmEmissionProbabilities	pure virtual
getNamespace() const =0	bpp::Parametrizable	pure virtual
getNumberOfParameters() const =0	bpp::Parametrizable	pure virtual
getNumberOfPositions() const =0	bpp::HmmEmissionProbabilities	pure virtual
getParameterNameWithoutNamespace(const std::string &name) const =0	bpp::Parametrizable	pure virtual
getParameters() const =0	bpp::Parametrizable	pure virtual
getParameters_()=0	bpp::Parametrizable	protectedpure virtual
getParameterValue(const std::string &name) const =0	bpp::Parametrizable	pure virtual
hasParameter(const std::string &name) const =0	bpp::Parametrizable	pure virtual
hmmStateAlphabet() const =0	bpp::HmmEmissionProbabilities	pure virtual
matchParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
operator()(size_t pos, size_t state) const =0	bpp::HmmEmissionProbabilities	pure virtual
operator()(size_t pos) const =0	bpp::HmmEmissionProbabilities	pure virtual
parameter(const std::string &name) const =0	bpp::Parametrizable	pure virtual
Parametrizable()	bpp::Parametrizable	inline
removeConstraint(const std::string &name)=0	bpp::Parametrizable	pure virtual
setAllParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0	bpp::Parametrizable	pure virtual
setHmmStateAlphabet(std::shared_ptr< const HmmStateAlphabet > stateAlphabet)=0	bpp::HmmEmissionProbabilities	pure virtual
setNamespace(const std::string &prefix)=0	bpp::Parametrizable	pure virtual
setParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
setParameterValue(const std::string &name, double value)=0	bpp::Parametrizable	pure virtual
~Clonable()=default	bpp::Clonable	virtual
~Parametrizable()	bpp::Parametrizable	inlinevirtual