bpp-core3  3.0.0
bpp::SimpleDiscreteDistribution Member List

This is the complete list of members for bpp::SimpleDiscreteDistribution, including all inherited members.

AbstractDiscreteDistribution(size_t nbClasses, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(size_t nbClasses, double precision, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
AbstractParameterAliasable(const std::string &prefix)bpp::AbstractParameterAliasableinline
AbstractParameterAliasable(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
AbstractParametrizable(const std::string &prefix)bpp::AbstractParametrizableinline
add(double category, double probability)bpp::AbstractDiscreteDistributionvirtual
addParameter_(Parameter *parameter)bpp::AbstractParameterAliasableinlineprotectedvirtual
addParameters_(const ParameterList &parameters)bpp::AbstractParameterAliasableinlineprotectedvirtual
bpp::aliasParameters(const std::string &p1, const std::string &p2)=0bpp::ParameterAliasablepure virtual
bpp::aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0bpp::ParameterAliasablepure virtual
bpp::AbstractParameterAliasable::aliasParameters(const std::string &p1, const std::string &p2)bpp::AbstractParameterAliasablevirtual
bpp::AbstractParameterAliasable::aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)bpp::AbstractParameterAliasablevirtual
bounds_bpp::AbstractDiscreteDistributionprotected
clone() constbpp::SimpleDiscreteDistributioninlinevirtual
deleteParameter_(size_t index)bpp::AbstractParameterAliasableinlineprotectedvirtual
deleteParameter_(std::string &name)bpp::AbstractParameterAliasableinlineprotectedvirtual
deleteParameters_(const std::vector< std::string > &names)bpp::AbstractParameterAliasableinlineprotectedvirtual
DiscreteDistributionInterface()bpp::DiscreteDistributionInterfaceinline
DISCRETIZATION_EQUAL_INTERVALbpp::AbstractDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROBbpp::AbstractDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROB_WHEN_POSSIBLEbpp::AbstractDiscreteDistributionstatic
discretizationScheme_bpp::AbstractDiscreteDistributionprotected
discretize()bpp::SimpleDiscreteDistributionvirtual
discretizeEqualIntervals()bpp::AbstractDiscreteDistributionprotected
discretizeEqualProportions()bpp::AbstractDiscreteDistributionprotected
distribution_bpp::AbstractDiscreteDistributionprotected
Expectation(double a) constbpp::SimpleDiscreteDistributionvirtual
fireParameterChanged(const ParameterList &parameters)bpp::SimpleDiscreteDistributionvirtual
bpp::getAlias(const std::string &name) const =0bpp::ParameterAliasablepure virtual
bpp::AbstractParameterAliasable::getAlias(const std::string &name) constbpp::AbstractParameterAliasablevirtual
getAliasedParameters(const ParameterList &pl) constbpp::AbstractParameterAliasable
bpp::getAliases() const =0bpp::ParameterAliasablepure virtual
bpp::AbstractParameterAliasable::getAliases() constbpp::AbstractParameterAliasablevirtual
getBound(size_t i) constbpp::AbstractDiscreteDistributioninlinevirtual
getBounds() constbpp::AbstractDiscreteDistributionvirtual
getCategories() constbpp::AbstractDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::AbstractDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::AbstractDiscreteDistributionvirtual
getFrom(const std::string &name) constbpp::AbstractParameterAliasable
getFromParameters(const ParameterList &pl) constbpp::AbstractParameterAliasable
getIInfCumulativeProbability(double category) constbpp::AbstractDiscreteDistributionvirtual
bpp::getIndependentParameters() const =0bpp::ParameterAliasablepure virtual
bpp::AbstractParameterAliasable::getIndependentParameters() constbpp::AbstractParameterAliasableinlinevirtual
getInfCumulativeProbability(double category) constbpp::AbstractDiscreteDistributionvirtual
getLowerBound() constbpp::SimpleDiscreteDistributioninlinevirtual
getName() constbpp::SimpleDiscreteDistributioninlinevirtual
bpp::getNamespace() const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::getNamespace() const overridebpp::AbstractParametrizableinlinevirtual
getNumberOfCategories() constbpp::AbstractDiscreteDistributionvirtual
bpp::getNumberOfIndependentParameters() const =0bpp::ParameterAliasablepure virtual
bpp::AbstractParameterAliasable::getNumberOfIndependentParameters() constbpp::AbstractParameterAliasableinlinevirtual
bpp::getNumberOfParameters() const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::getNumberOfParameters() const overridebpp::AbstractParametrizableinlinevirtual
getParameter(const std::string &name) constbpp::AbstractParametrizableinline
getParameter(size_t i) constbpp::AbstractParametrizableinlineprotected
getParameter(size_t i)bpp::AbstractParametrizableinlineprotected
getParameter_(const std::string &name)bpp::AbstractParametrizableinlineprotected
getParameter_(size_t index)bpp::AbstractParametrizableinlineprotected
getParameter_(size_t index) constbpp::AbstractParametrizableinlineprotected
bpp::getParameterNameWithoutNamespace(const std::string &name) const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::getParameterNameWithoutNamespace(const std::string &name) const overridebpp::AbstractParametrizablevirtual
bpp::getParameters() const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::getParameters() const overridebpp::AbstractParametrizableinlinevirtual
bpp::getParameters_()=0bpp::Parametrizableprotectedpure virtual
bpp::AbstractParameterAliasable::getParameters_() overridebpp::AbstractParametrizableinlineprotectedvirtual
bpp::getParameterValue(const std::string &name) const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::getParameterValue(const std::string &name) const overridebpp::AbstractParametrizableinlinevirtual
getParameterWithNamespace_(const std::string &name)bpp::AbstractParametrizableinlineprotected
getParameterWithNamespace_(const std::string &name) constbpp::AbstractParametrizableinlineprotected
getProbabilities() constbpp::AbstractDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::AbstractDiscreteDistributionvirtual
getProbability(double category) constbpp::AbstractDiscreteDistributionvirtual
getRanges() constbpp::SimpleDiscreteDistributioninline
getSSupCumulativeProbability(double category) constbpp::AbstractDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::AbstractDiscreteDistributionvirtual
getUpperBound() constbpp::SimpleDiscreteDistributioninlinevirtual
getValueCategory(double value) constbpp::AbstractDiscreteDistributionvirtual
givenRanges_bpp::SimpleDiscreteDistributionprivate
hasIndependentParameter(const std::string &name) constbpp::AbstractParameterAliasableinline
bpp::hasParameter(const std::string &name) const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::hasParameter(const std::string &name) const overridebpp::AbstractParametrizableinlinevirtual
includeParameters_(const ParameterList &parameters)bpp::AbstractParameterAliasableinlineprotectedvirtual
intMinMax_bpp::AbstractDiscreteDistributionprotected
bpp::matchParametersValues(const ParameterList &parameters)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::matchParametersValues(const ParameterList &parameters) overridebpp::AbstractParametrizableinlinevirtual
median_bpp::AbstractDiscreteDistributionprotected
numberOfCategories_bpp::AbstractDiscreteDistributionprotected
operator=(const SimpleDiscreteDistribution &)bpp::SimpleDiscreteDistribution
bpp::AbstractDiscreteDistribution::operator=(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
bpp::AbstractParameterAliasable::operator=(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
bpp::parameter(const std::string &name) const =0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::parameter(const std::string &name) const overridebpp::AbstractParametrizableinlinevirtual
ParameterAliasable()bpp::ParameterAliasableinline
Parametrizable()bpp::Parametrizableinline
pProb(double x) constbpp::SimpleDiscreteDistributionvirtual
precision() constbpp::AbstractDiscreteDistributioninline
print(OutputStream &out) constbpp::AbstractDiscreteDistributionvirtual
qProb(double x) constbpp::SimpleDiscreteDistributionvirtual
rand() constbpp::AbstractDiscreteDistributionvirtual
randC() constbpp::AbstractDiscreteDistributioninlinevirtual
bpp::removeConstraint(const std::string &name)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::removeConstraint(const std::string &name) overridebpp::AbstractParametrizableinlinevirtual
resetParameters_()bpp::AbstractParameterAliasableinlineprotected
restrictToConstraint(const ConstraintInterface &c)bpp::SimpleDiscreteDistributionvirtual
set(double category, double probability)bpp::AbstractDiscreteDistributionvirtual
bpp::setAllParametersValues(const ParameterList &parameters)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::setAllParametersValues(const ParameterList &parameters) overridebpp::AbstractParametrizableinlinevirtual
bpp::setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) overridebpp::AbstractParametrizableinlinevirtual
setMedian(bool median)bpp::AbstractDiscreteDistributioninlinevirtual
bpp::setNamespace(const std::string &prefix)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::setNamespace(const std::string &prefix)bpp::AbstractParameterAliasablevirtual
setNumberOfCategories(size_t nbClasses)bpp::AbstractDiscreteDistributionvirtual
bpp::setParametersValues(const ParameterList &parameters)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::setParametersValues(const ParameterList &parameters) overridebpp::AbstractParametrizableinlinevirtual
bpp::setParameterValue(const std::string &name, double value)=0bpp::Parametrizablepure virtual
bpp::AbstractParameterAliasable::setParameterValue(const std::string &name, double value) overridebpp::AbstractParametrizableinlinevirtual
shareParameter_(const std::shared_ptr< Parameter > &parameter)bpp::AbstractParameterAliasableinlineprotectedvirtual
shareParameters_(const ParameterList &parameters)bpp::AbstractParameterAliasableinlineprotectedvirtual
SimpleDiscreteDistribution(const std::map< double, double > &distribution, double precision=NumConstants::TINY(), bool fixed=false)bpp::SimpleDiscreteDistribution
SimpleDiscreteDistribution(const std::vector< double > &values, const std::vector< double > &probas, double prec=NumConstants::TINY(), bool fixed=false)bpp::SimpleDiscreteDistribution
SimpleDiscreteDistribution(const std::vector< double > &values, const std::map< size_t, std::vector< double >> &ranges, const std::vector< double > &probas, double prec=NumConstants::TINY(), bool fixed=false)bpp::SimpleDiscreteDistribution
SimpleDiscreteDistribution(const SimpleDiscreteDistribution &)bpp::SimpleDiscreteDistribution
strictLowerBound() constbpp::AbstractDiscreteDistributioninlinevirtual
strictUpperBound() constbpp::AbstractDiscreteDistributioninlinevirtual
bpp::unaliasParameters(const std::string &p1, const std::string &p2)=0bpp::ParameterAliasablepure virtual
bpp::AbstractParameterAliasable::unaliasParameters(const std::string &p1, const std::string &p2)bpp::AbstractParameterAliasablevirtual
~AbstractDiscreteDistribution()bpp::AbstractDiscreteDistributioninlinevirtual
~AbstractParameterAliasable()bpp::AbstractParameterAliasableinlinevirtual
~AbstractParametrizable()bpp::AbstractParametrizableinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~DiscreteDistributionInterface()bpp::DiscreteDistributionInterfaceinlinevirtual
~ParameterAliasable()bpp::ParameterAliasableinlinevirtual
~Parametrizable()bpp::Parametrizableinlinevirtual
~SimpleDiscreteDistribution()bpp::SimpleDiscreteDistributioninlinevirtual