bpp::AAInteriorSubstitutionRegister Member List

This is the complete list of members for bpp::AAInteriorSubstitutionRegister, including all inherited members.

AAInteriorSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, std::shared_ptr< const GeneticCode > genCode)	bpp::AAInteriorSubstitutionRegister	inline
AAInteriorSubstitutionRegister(const AAInteriorSubstitutionRegister &ais)	bpp::AAInteriorSubstitutionRegister	inline
AbstractSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, const std::string &name)	bpp::AbstractSubstitutionRegister	inline
AbstractSubstitutionRegister(const AbstractSubstitutionRegister &asr)	bpp::AbstractSubstitutionRegister	inline
alphabet() const override	bpp::AbstractSubstitutionRegister	inlinevirtual
categoryCorrespondance_	bpp::AAInteriorSubstitutionRegister	private
clone() const	bpp::AAInteriorSubstitutionRegister	inlinevirtual
genCode_	bpp::AAInteriorSubstitutionRegister	private
GeneralSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap)	bpp::GeneralSubstitutionRegister	inline
GeneralSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, const RowMatrix< size_t > &matrix)	bpp::GeneralSubstitutionRegister	inline
GeneralSubstitutionRegister(const GeneralSubstitutionRegister &gsr)	bpp::GeneralSubstitutionRegister	inline
getAlphabet() const override	bpp::AbstractSubstitutionRegister	inlinevirtual
getName() const override	bpp::AbstractSubstitutionRegister	inlinevirtual
getNumberOfSubstitutionTypes() const override	bpp::GeneralSubstitutionRegister	inlinevirtual
getStateMap() const override	bpp::AbstractSubstitutionRegister	inlinevirtual
getType(size_t i, size_t j) const override	bpp::GeneralSubstitutionRegister	inlinevirtual
getTypeName(size_t type) const	bpp::AAInteriorSubstitutionRegister	inlinevirtual
matrix_	bpp::GeneralSubstitutionRegister	protected
name_	bpp::AbstractSubstitutionRegister	protected
operator=(const AAInteriorSubstitutionRegister &ais)	bpp::AAInteriorSubstitutionRegister	inline
bpp::GeneralSubstitutionRegister::operator=(const GeneralSubstitutionRegister &gsr)	bpp::GeneralSubstitutionRegister	inline
bpp::AbstractSubstitutionRegister::operator=(const AbstractSubstitutionRegister &asr)	bpp::AbstractSubstitutionRegister	inline
size_	bpp::GeneralSubstitutionRegister	protected
stateMap() const override	bpp::AbstractSubstitutionRegister	inlinevirtual
stateMap_	bpp::AbstractSubstitutionRegister	protected
SubstitutionRegisterInterface()	bpp::SubstitutionRegisterInterface	inline
types_	bpp::GeneralSubstitutionRegister	protected
updateMatrix_()	bpp::AAInteriorSubstitutionRegister	inlineprotected
updateTypes_()	bpp::GeneralSubstitutionRegister	protected
~AAInteriorSubstitutionRegister()	bpp::AAInteriorSubstitutionRegister	inline
~AbstractSubstitutionRegister()	bpp::AbstractSubstitutionRegister	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~GeneralSubstitutionRegister()	bpp::GeneralSubstitutionRegister	inlinevirtual
~SubstitutionRegisterInterface()	bpp::SubstitutionRegisterInterface	inlinevirtual