bpp::AbstractReward Member List

This is the complete list of members for bpp::AbstractReward, including all inherited members.

AbstractReward(std::shared_ptr< const AlphabetIndex1 > alphIndex)	bpp::AbstractReward	inline
AbstractReward(const AbstractReward &ar)	bpp::AbstractReward	inline
alphabetIndex() const	bpp::AbstractReward	inline
alphabetIndexHasChanged()=0	bpp::AbstractReward	protectedpure virtual
alphIndex_	bpp::AbstractReward	protected
clone() const =0	bpp::Reward	pure virtual
getAllRewards(double length) const =0	bpp::Reward	pure virtual
getAlphabet() const	bpp::Reward	inlinevirtual
getAlphabetIndex() const	bpp::AbstractReward	inlinevirtual
getNumberOfStates() const	bpp::Reward	inlinevirtual
getReward(size_t initialState, size_t finalState, double length) const =0	bpp::Reward	pure virtual
hasAlphabetIndex() const	bpp::AbstractReward	inlinevirtual
operator=(const AbstractReward &ar)	bpp::AbstractReward	inline
Reward()	bpp::Reward	inline
setAlphabetIndex(std::shared_ptr< const AlphabetIndex1 > alphIndex)	bpp::AbstractReward	inlinevirtual
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model)=0	bpp::Reward	pure virtual
storeAllRewards(double length, Eigen::MatrixXd &mat) const =0	bpp::Reward	pure virtual
~AbstractReward()	bpp::AbstractReward	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~Reward()	bpp::Reward	inlinevirtual