bpp::AbstractSubstitutionCount Member List

This is the complete list of members for bpp::AbstractSubstitutionCount, including all inherited members.

AbstractSubstitutionCount(std::shared_ptr< const SubstitutionRegisterInterface > reg)	bpp::AbstractSubstitutionCount	inline
clone() const =0	bpp::SubstitutionCountInterface	pure virtual
getAllNumbersOfSubstitutions(double length, size_t type) const =0	bpp::SubstitutionCountInterface	pure virtual
getAlphabet() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfStates() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type) const =0	bpp::SubstitutionCountInterface	pure virtual
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const =0	bpp::SubstitutionCountInterface	pure virtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCountInterface	inlinevirtual
getSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
hasSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
register_	bpp::AbstractSubstitutionCount	protected
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model)=0	bpp::SubstitutionCountInterface	pure virtual
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg)	bpp::AbstractSubstitutionCount	inlinevirtual
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const =0	bpp::SubstitutionCountInterface	pure virtual
SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inline
substitutionRegisterHasChanged()=0	bpp::AbstractSubstitutionCount	protectedpure virtual
~AbstractSubstitutionCount()	bpp::AbstractSubstitutionCount	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inlinevirtual